Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq621 105 2e-19 seq4 104 7e-19 seq6727 102 3e-18 seq771 102 3e-18 seq256 100 9e-18 seq115 98.7 3e-17 seq183 95.1 4e-16 seq94 95.1 4e-16 >seq621 Length=296405 Score = 105 bits (116), Expect = 2e-19 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 2752 TTTGTACT-GTGTTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTA 2810 |||||||| ||| || || ||| |||||||||||||||||| |||||||||||||||| Sbjct 18698 TTTGTACTTGTGGATAGCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTA 18639 Query 2811 AAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 |||||||||||||||| ||| || ||| || Sbjct 18638 AAGGTCCCTGGTTCAATCCCTGGTTTCGGC 18609 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 20354 TATCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 20295 Query 2825 AACCCCGGGCTTCAGC 2840 || ||| || ||| || Sbjct 20294 AATCCCTGGTTTCGGC 20279 >seq4 Length=335973 Score = 104 bits (114), Expect = 7e-19 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 2764 TTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 |||| || ||| |||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 78989 TTATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTT 79048 Query 2824 CAACCCCGGGCTTCAGC 2840 ||| |||||| ||| || Sbjct 79049 CAATCCCGGGTTTCGGC 79065 >seq6727 Length=797502 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 481071 TATCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTC 481130 Query 2825 AACCCCGGGCTTCAGC 2840 || |||||| ||| || Sbjct 481131 AATCCCGGGTTTCGGC 481146 >seq771 Length=673126 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 440937 TATGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 440996 Query 2825 AACCCCGGGCTTCAGC 2840 | ||| || ||| || Sbjct 440997 GATCCCTGGTTTCGGC 441012 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 466940 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 466881 Query 2829 CCGGGCTTCAGC 2840 || || ||| || Sbjct 466880 CCTGGTTTCGGC 466869 >seq256 Length=329426 Score = 100 bits (110), Expect = 9e-18 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 223759 ATCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCG 223700 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 223699 ATCCCGGGTTTCGGC 223685 >seq115 Length=1417952 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 952167 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 952108 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 952107 CCGGGTTTCGGC 952096 >seq183 Length=738700 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 194127 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 194186 Query 2829 CCGGGCTTCAGC 2840 || || ||| || Sbjct 194187 CCTGGTTTCGGC 194198 >seq94 Length=616059 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 303763 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 303822 Query 2829 CCGGGCTTCAGC 2840 || || ||| || Sbjct 303823 CCTGGTTTCGGC 303834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848326187460