Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq326 282 4e-71 >seq326 Length=503882 Score = 282 bits (312), Expect = 4e-71 Identities = 798/1209 (66%), Gaps = 25/1209 (2%) Strand=Plus/Plus Query 59918 TGGATAAAGTCGTTGCCGCATATTTTGTCGAATGGGGTGTTTATCCTAGAAATTTTCCTG 59977 |||| || || |||| || || ||||| |||||||| |||||||||||||| | ||| | Sbjct 280447 TGGA-AAGGTTGTTGGTGCTTACTTTGTTGAATGGGGAGTTTATCCTAGAAAGTATCCCG 280505 Query 59978 TAGATCGAGTGCCCACTCCTAATCTATCGCATATTCTATACGGATTTATTCCGATATGCG 60037 | || || | || | || ||| || | ||| || | ||||| ||||| ||||| || | Sbjct 280506 TGGACCGTATACCAATCCCGAATTTAACTCATCTTTTGTACGGTTTTATCCCGATTTGTG 280565 Query 60038 GCGGCGACGGTATCAACGACAGTCTTAAAACCATAACCGGTAGTTTCGAAGCGCTTCAGC 60097 | || || || |||||||||||| | ||| || || |||||| ||||| | ||| Sbjct 280566 GTGGTGATGGAATCAACGACAGTTTGAAAGAAATTGAGGGAAGTTTCCAAGCGTTACAGA 280625 Query 60098 GATCGTGTTCAGGTCGAGACGACTTTAAAGTATCAATTCACGATCCATGGGCCGCCGTCC 60157 |||| || || ||||| |||||||||||||| |||||||| || ||||| ||| | | Sbjct 280626 GATCTTGCAGTGGCCGAGAAGACTTTAAAGTATCCATTCACGACCCCTGGGCTGCCTTAC 280685 Query 60158 AGAAACCCCAAAAACAAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTCGGACAAT 60217 | ||||| |||||| | | | | ||||| |||||||||||||| || || || || | Sbjct 280686 AAAAACCACAAAAAGGACTTTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGCCAGT 280745 Query 60218 TAATGGCAGCCAAACTGGCAAATCCCCACATCAAAGTGTTGCCCTCGATCGGAGGTTGGA 60277 | ||| | |||| |||| || | | || | | || || || || ||||||| Sbjct 280746 TGATGTCTTTAAAACAAGCAAGACCTGATCTAAAGATTCTTCCTTCTATTGGCGGTTGGA 280805 Query 60278 CTCTATCCGATCCGTTCTTTTACTTTCACGATACGGATAAACGAAAGATTTTTGTAGATT 60337 | || | ||||| ||||| | ||| | || | || || || | ||| | || | Sbjct 280806 CCCTCGCTGATCCATTCTTCTTCTTCGATGACAAGGTAAAGAGAGCGCGTTTCATTGACT 280865 Query 60338 CTGTCGTGGAGTTTCTACAGACGTGGAAATTTTTCGACGGTGTCGACATCGACTGGGAGT 60397 |||| || || || || || |||||||||||||| ||||| ||||| |||||||| | Sbjct 280866 CTGTAAAAGACTTCCTTCAAACCTGGAAATTTTTCGATGGTGTAGACATAGACTGGGAAT 280925 Query 60398 TTCCCGGCGGAAAAGGTGCCAATCCCAACGTAGGCGACGCCGAACGCGATCGCGAAACGT 60457 | || || || || || || || || | | || | || || ||| | ||| | Sbjct 280926 TCCCTGGAGGTAAGGGCGCAAACCCGACACTTGGTG-GTCCTAA--GGATGGTGAAGTCT 280982 Query 60458 ACACCATTCTGTTGAAAGATTTACGCGAGGCGCTAGATCGATTAACCCTCGAAACG---A 60514 | | | |||| || | || || ||| | |||| || |||| | | Sbjct 280983 ATGTTTTATTAATGAAGGAGCTTCGAGAAATGCTTAACGAATTATCCAATGAAATGGGCA 281042 Query 60515 ATCGAACGTACGAGTTGACCAGCGCAATTAGCGCCGGCGATGACAAAATCGCCGTCGTCG 60574 | ||| |||||| || || || ||||| || || ||||||||| || || | Sbjct 281043 A--GAA-GTACGAATTAACATCAGCTATTAGTGCTGGATGGGACAAAATCCAAGTTGTAG 281099 Query 60575 ACTACACCGCTGCTCAAGAATATTTAGATTTAAtttttttGATGACGTACGATTTTAAAG 60634 |||||| ||||| || | || | || |||||| | |||| ||||| ||||| | Sbjct 281100 ACTACAAAGCTGCGCAGAATTACATGGACCATATTTTTGTTATGAGCTACGACTTTAAGG 281159 Query 60635 GAGCCTGGTCGAATAACGATCTGGGCTATCAGACTACTCTATACGCTCCTTCGTTTAATC 60694 | || ||||| ||| | | || |||| || | || || ||||| || || Sbjct 281160 GTGCTTGGTCCAATGATACATTAGGTCATCAAACCGCACTGTATGCTCCCGAGTGGAACT 281219 Query 60695 CTAAAGAACATTATACTACCGATTTTGCCGTTC-GTGCTCTACTCAAGCAAAAAGTCGAG 60753 | || ||| |||||| || || || | |||| || | ||| | ||| || | Sbjct 281220 CAAAGGAAACTTATACCACAGACTTCGGTGTTCAGTAC-CTATTGGCTCAAGGTGTAAAC 281278 Query 60754 AATaaaaaaaTTATTGTCGGCGTGGCCATGTACGGTCGCGGCTGGACCGGCGTAAGCGAT 60813 || |||||| | || || || || ||||| || || || |||||||| ||| | || Sbjct 281279 CCGAAGAAAATTGTCGTAGGTGTTGCAATGTATGGACGTGGGTGGACCGGAGTACACAAT 281338 Query 60814 TTTGTTGAC-GATAATAATCCATTTTCCGGAACGGCCAAGGGACCGGTCAAAGGAACATG 60872 | | || ||| |||||| || | || | || | ||||| ||| || ||||| Sbjct 281339 TAT----ACAGATGGTAATCCTTTCACGGGGATCGCAACAGGACCTTGCAAGGGCACATG 281394 Query 60873 GGAAGACGGAGTCGTCGACTATAGAGAGATTTTCAATAATTTCGTCGCCAATAACCCGAT 60932 | | || || || ||||| || || || | || || ||| | | || | ||| Sbjct 281395 GCAGGATGGTGTGGTCGATTACAGGGA-AATTGCA--AATGGCATTGCTCAAAACAAATG 281451 Query 60933 GGAAT---ATTACGATTCCGTTGCAAAAGCGGCGTACGTCTTTAATAACTCGACCGGCGA 60989 ||| | | |||||| |||||| |||| || || || || || || || || || Sbjct 281452 GGAGTTCCACTACGATAACGTTGCCCAAGCTGCTTATGTGTTCAAACCATCTACAGGGGA 281511 Query 60990 GCTCATCACTTACGACAATCCTCGGTCGGTTCTGGATAAAGCAAAATATGTATTGGACTA 61049 || | || |||||||| | | || ||| || |||| ||||| ||| | | Sbjct 281512 ACTTGTTACATACGACAACGCGAGATCCGTTACCGAGAAAGGTAAATACGTAAGAAAGAA 281571 Query 61050 TAGCTTGGGTGGTTTGTTCGCTTGGGAGATCGACGCCGACAACGGATTAC-TTCTAAACG 61108 | | | |||||||||||||| ||||| || ||||| || ||||| | || | | |||| Sbjct 281572 TTACCTAGGTGGTTTGTTCGCGTGGGAAATAGACGCAGATAACGG-TGACATATTGAACG 281630 Query 61109 CCATGAACA 61117 | ||||||| Sbjct 281631 CAATGAACA 281639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445053518079360