Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq129 123 2e-23 >seq129 Length=3256488 Score = 123 bits (136), Expect = 2e-23 Identities = 348/527 (66%), Gaps = 37/527 (7%) Strand=Plus/Minus Query 99638 AACGGGTTTTATTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTTTGCAAAGTTGAA 99697 || || |||||||| | || | || ||||||||||| ||||| || || || || ||| Sbjct 1156014 AATGGATTTTATTACCTCGGTCACGGCGACGAAGTGCGTTGCGCCTTCTGTAAGGTGGAA 1155955 Query 99698 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCTGCAGATCATAAACGATGGGCGCCGCAA 99757 |||||| | ||| | ||||| || ||||| ||| ||||||| || ||||||||||| Sbjct 1155954 ATAATGAGATGGGTCGAGGGAGATGACCCAGCTCAGGATCATAGTCGCTGGGCGCCGCAG 1155895 Query 99758 TGCCCGTTTATGCAGCAGAATCGAACGGTTGCTACGGTCAT-TCAATCACCAGTGCAAAT 99816 || || ||| || || | || | || |||| || | || || | | ||||| | Sbjct 1155894 TGTCCCTTTCTG-AGACG--TCAGATGGGTGCT--GGAAACGTCCCTCTCGA-TGCAACT 1155841 Query 99817 TGTTAGTAAAGAT------GAATGTAAATTGT---CGC--GTAAA--------------- 99850 || || || | ||||| || ||| |||| Sbjct 1155840 -GTCAGCGGAGGTCGCGACGAATGCGGTGTGAGAGCGCCAGTAACCGCGGCGCCTGTGCG 1155782 Query 99851 -ATGTCCGGCCCCGTGCACCCTAAATACGGCACTAAATCTGCACGTTTAGAAACTTTTGT 99909 ||| | ||||| || ||| | | ||||| | | |||| ||| | || |||| Sbjct 1155781 TATGCCAGGCCCAGTACACTCCAGATACGCGTCCGAGGCTGCTCGTCTTCGCACCTTTGC 1155722 Query 99910 GGATTGGCCGCTCAGTTTGAAACAAAAACCAGAGCAATTGGCCGAAGCCGGTTTTTATTA 99969 |||||||| ||| || ||||| || || || |||| ||||| || |||| || Sbjct 1155721 CGATTGGCCTAGAAGTATGCGCCAAAAGCCCGAAGAACTGGCGGAAGCTGGCTTTTTCTA 1155662 Query 99970 CACCGGCAAAGGTGACAAAGTTAAATGTTTTCATTGCGACGGCGGCCTCAAAGACTGGGA 100029 ||| || | || |||||| ||||| ||| | || || || ||||| || |||||||| Sbjct 1155661 CACGGGTCACGGCGACAAAACCAAATGCTTTTACTGTGATGGGGGCCTGAAGGACTGGGA 1155602 Query 100030 AAGCACCGACGAGCCGTGGCATGAACACGCACGTTGGTTTGATCGCTGCACATACGTGCG 100089 || ||||| || ||| | ||||||| ||||||||||| || ||| | ||||| | Sbjct 1155601 AAATGACGACGTCCCATGGGAGCAACACGCCCGTTGGTTTGACCGATGCGCTTACGTCCA 1155542 Query 100090 GCTTGTAAAGGGTTACGACTACGTGCAGCGCGTGCTTAG-CGAAGCG 100135 | | || || ||| ||||||||| ||| || ||||| ||||||| Sbjct 1155541 GTTAGTGAAAGGTCGCGACTACGTACAGAAAGT-CTTAGCCGAAGCG 1155496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402293569875584