Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1660 127 3e-23 seq20 114 2e-19 >seq1660 Length=2032 Score = 127 bits (140), Expect = 3e-23 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| || ||||||||||| ||| |||| | ||| || ||| | Sbjct 431 ATCTACAAGGTACTGAAGCAGGTGCATCCCGACACCGGT-----ATC-TCTTCGAAGGCG 484 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||||| |||| | |||| | ||||| Sbjct 485 ATGTCAATCATGAACTCGTTCGTGAACGACATCTTCGAGAGGATCGCGGCGGAGGCGTCC 544 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| |||||| | |||||| | |||||| ||||| Sbjct 545 CGTCTCGCACACTACAACAAGCGTTCGACGATCACGTCCCGCGAGGTGCAGACCTCCGTG 604 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| |||||| || |||| |||||||||| ||||||||||| Sbjct 605 AGGCTCCTGCTGCCCGGCGAGCTCGCCAAGCACGCCGTCAGCGAGGGCACCA 656 >seq20 Length=420337 Score = 114 bits (126), Expect = 2e-19 Identities = 167/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 724910 TATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATC-CTCCAACAAGT 724968 ||| ||||||||||| ||||||||||| ||| |||| | ||| || ||| || Sbjct 10714 TATTTACAAGGTGCTAAAGCAGGTGCATCCCGACACCGGT-----ATCTCTTCAA--AGG 10766 Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 | ||| | |||||||||||||| || |||||||| |||| | |||| | ||||| Sbjct 10767 CGATGACAATCATGAACTCGTTCGTGAACGACATCTTCGAGAGGATCGCGGCGGAGGCGT 10826 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || || || | || ||||||||| |||||| | |||||| | |||||| ||| Sbjct 10827 CCCGTCTCGCTCACTACAACAAGCGTTCGACGATCACGTCCCGCGAGGTGCAGACCTCCG 10886 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | || | ||| || || || |||| |||||| ||| ||||||||||| Sbjct 10887 TGAGGCTCCTTCTGCCTGGTGAGCTCGCCAAGCACGCTGTCAGCGAGGGCACCA 10940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177102471894376