Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq429 140 3e-28 seq53 100 3e-16 >seq429 Length=186180 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | |||||||||||| |||| ||| ||||| || ||||| || |||| | Sbjct 15712 CCTCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGAC 15653 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| ||| | || || || || ||||| || || ||||| ||||| ||||| | || Sbjct 15652 AGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGG 15593 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||| ||| |||||| ||||| | || | | |||||| | |||||| Sbjct 15592 ATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACC 15533 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || |||||||| | ||||||||||| |||||||| Sbjct 15532 TCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCAT 15486 >seq53 Length=2198565 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || | | ||| || | || |||| |||||| || ||||| Sbjct 1830721 CTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAA 1830662 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 || | || |||||||| | |||| | ||||||||| ||| ||| || || | | Sbjct 1830661 GATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGAT-TTTAGCTTTAACAT 1830603 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| | ||| || || | ||||| ||||| ||||| | |||||| | Sbjct 1830602 TTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTA 1830543 Query 35724 CAAATATCTGCATT 35737 | || ||||||||| Sbjct 1830542 CGAAGATCTGCATT 1830529 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||||||||| || | || ||||| | || |||| ||||| || || || Sbjct 1831176 TCCTTTTGAATGTTGTAGTCTGACAGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAG 1831117 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 || | || |||||||| | |||| | |||||||| ||| ||| || || | | | Sbjct 1831116 ATAAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCTTGGAT-TTTAGCTTTAACATT 1831058 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | ||| ||||||| ||||| ||||| || |||| ||||| || Sbjct 1831057 TTCAATGGTGTCTGAAGGTTCAACCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAAC 1830998 Query 35725 AAATATCTGCATTC 35738 ||| || ||||||| Sbjct 1830997 AAAAATTTGCATTC 1830984 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||||||||| || | | ||| || | || |||| |||||| || ||||| Sbjct 1830948 TCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAG 1830889 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 || | || |||||||| | |||| | ||||||| | ||| ||| || || | | | Sbjct 1830888 ATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGT-CTTGAATTTTAGCTTTGACATT 1830830 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | |||||| || | ||||| ||||| || || | ||||| || Sbjct 1830829 TTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAAC 1830770 Query 35725 AAATATCTGCATTC 35738 || || ||||||| Sbjct 1830769 GAAAATTTGCATTC 1830756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450752194607840