Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq53 163 3e-35 seq326 156 4e-33 seq401 136 4e-27 seq129 107 2e-18 seq429 104 2e-17 >seq53 Length=2198565 Score = 163 bits (180), Expect = 3e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| ||||| || ||||| || || || || ||||||||||||||||||||||| Sbjct 1830986 TTCCTCCCCTGAGACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTG 1830927 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || |||| | || || | ||| || || ||||| || | ||| ||||| || || | Sbjct 1830926 AAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTG 1830867 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||||||||| |||||| || | ||||| || | ||||| Sbjct 1830866 GAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCA 1830807 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || |||||||| || || | ||||||||||||||||||||| Sbjct 1830806 CTTCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCATT 1830757 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||| || ||||| || || || || || |||||||||||||||||||| Sbjct 1830758 TTCCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTG 1830699 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || |||| | || || | ||| || || ||||| || | ||| ||||| || || | Sbjct 1830698 AAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTG 1830639 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || ||||| ||| || || | ||||| || | ||| | Sbjct 1830638 GAATACCTTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAA 1830579 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 | || | || |||||||| || || | |||||| ||||| || |||||||| Sbjct 1830578 CTTCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCATTTT 1830527 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC- 134542 || || ||||| || || | || || || | || ||||||||||||||||||||||| Sbjct 1831215 TTGCCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCT 1831156 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | || || | | | || || | || || || || || || | ||| ||||| || || Sbjct 1831155 GACAGCGTTCGGCCA-TCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGG 1831097 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || || ||||| || ||||| ||||| ||| || || | ||||| || | ||| Sbjct 1831096 TGGAATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTC 1831037 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || | || |||||||| || || | |||||||| |||||||||||| Sbjct 1831036 AACCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCATT 1830985 >seq326 Length=503882 Score = 156 bits (172), Expect = 4e-33 Identities = 283/409 (69%), Gaps = 4/409 (1%) Strand=Plus/Plus Query 104653 TACGGATTTATACCGATTTGCGGTGGCGACGGCATCAACGACGCTCT-AAAGACCGTTCC 104711 ||||| ||||| |||||||| ||||| || || ||||||||| | | ||||| || Sbjct 280544 TACGGTTTTATCCCGATTTGTGGTGGTGATGGAATCAACGACAGTTTGAAAGAAA-TTGA 280602 Query 104712 GGGTAGTTTTGAAGCGTTGCAAAAATCGTGCGCTGGACGGGAAAACTTCAAAGTGGCCAT 104771 ||| ||||| ||||||| || | ||| ||| ||| || ||| |||| ||||| |||| Sbjct 280603 GGGAAGTTTCCAAGCGTTACAGAGATCTTGCAGTGGCCGAGAAGACTTTAAAGTATCCAT 280662 Query 104772 TCACGATCCGTGGGCGGCGGTGCAAAAACCGCAAAAAGGTGCCTCCGCTTGGAACGAACC 104831 |||||| || ||||| || | |||||||| |||||||| || | ||||| ||||| Sbjct 280663 TCACGACCCCTGGGCTGCCTTACAAAAACCACAAAAAGGACTTTCTTCCTGGAATGAACC 280722 Query 104832 GTACAAAGGCAATTTTGGTCAGATAATGGCCATCAAAAAAGCCAATCCTCAATTGCGCGT 104891 ||||||||||| ||||| ||| | ||| | | ||| |||| | ||| | | | Sbjct 280723 ATACAAAGGCAACTTTGGCCAGTTGATGTCTTTAAAACAAGCAAGACCTGATCTAAAGAT 280782 Query 104892 ATTGCCCTCGGTGGGCGGGTGGACGCTGTCCGATCCTTTTTATCACATGCACGACGCTGA 104951 | || || | ||||| ||||| || | ||||| || | | | | ||| | Sbjct 280783 TCTTCCTTCTATTGGCGGTTGGACCCTCGCTGATCCATTCTTCTTCTTCGATGACAAGGT 280842 Query 104952 AAAACGTGCCACGTTT-GTGGAGTCGGTGCGCGAATTTTTGTTGACTTGGAAATTCTTCG 105010 ||| | | | ||||| | || || || || || | || |||||||| |||| Sbjct 280843 AAAGAGAG-CGCGTTTCATTGACTCTGTAAAAGACTTCCTTCAAACCTGGAAATTTTTCG 280901 Query 105011 ATGGCGTCGACATCGATTGGGAGTTTCCGGGCGGCAAAGGCGCCAACCC 105059 |||| || ||||| || ||||| || || || || || ||||| ||||| Sbjct 280902 ATGGTGTAGACATAGACTGGGAATTCCCTGGAGGTAAGGGCGCAAACCC 280950 >seq401 Length=384550 Score = 136 bits (150), Expect = 4e-27 Identities = 673/1058 (64%), Gaps = 25/1058 (2%) Strand=Plus/Minus Query 8272 ATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGT 8331 |||||||| |||||| | || ||| |||||||||||| ||| | ||||| ||| Sbjct 357825 ATGCTGTATAAAGACTCATGTAACAGAAAAAGCAATCAACAAAACCTTGGCACAATTAAA 357766 Query 8332 TGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGC 8391 || |||||||| ||| | ||||||||| | |||| | || || |||||||| || || Sbjct 357765 TGTAGCAATCTCTGCACAGAAATTGTAGAATACACCTCGGAAGATGAAGTGGCTGTCTGT 357706 Query 8392 AATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACGACTTT 8451 ||| |||| || | | | ||| ||| || || || | |||| |||||| | ||| Sbjct 357705 AATTTAGCATCAATAGCTCTCAACATGTTTGTCAAT-GAAGA-CAAA-ACTTACAATTTT 357649 Query 8452 GAACAATTGAAAAACGCCGTGCAAGTGACGGTACGCAA--TTTAGATCGCATCATTGATG 8509 ||| | || || | | | || | ||| ||| |||| | || ||||||| Sbjct 357648 GAAAAGTTAAAGGAAGTCACTAAAACAAT--TACCCAAAATTTAAACAAAATTATTGATG 357591 Query 8510 TCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCG 8569 | |||| ||||| | |||||| || |||||| | |||||||| |||| Sbjct 357590 TGAATTACTATCCAGTTCCAGAAGCTAAAAATTCAAACATGAGACACAGACCAATTGGGA 357531 Query 8570 TGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAG 8629 | || || |||||| |||| || | || | | |||| || || ||||| || Sbjct 357530 TTGGTGTTCAAGGTTTGGCTGATACATTCGTTTTAATGCGTTATCCATATGAAAGTGAAA 357471 Query 8630 AAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCA 8689 | || | | || | ||||| || || | ||||| || || |||||||| | Sbjct 357470 ATGCAATTAAATTAAATCAACAAATATTTGAGACTATTTATTATGGAGCCTTAGAAGCAA 357411 Query 8690 GCTGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCC 8749 ||||| || | || | || || ||| | | ||||||| ||| Sbjct 357410 GCTGTGAATTAGCAGAAAAAGAAGGTGTATACAGTACCTTTAAAAATAGCCCTGTCAGTA 357351 Query 8750 GCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCG 8809 || || |||||||| || ||||||||| | || || | ||||||||| | Sbjct 357350 ATGGTATTTTGCAATATGATATGTGGAATAAAATACCTACGGACCTTTGGAATTGGGTTG 357291 Query 8810 ATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTC---GCTGTTGGTGGCTTACA 8866 | | ||| |||||| || || ||| | || || || ||| || | | || | Sbjct 357290 CTCTAAAAGAGAAAATTTCTAAACACGGGCTTCGTAACTCTTTGCTTTTAGCGCCT---A 357234 Query 8867 TGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCA 8926 |||| ||||| | || || ||||| | ||||| || ||||||||||| || || || Sbjct 357233 TGCCTACCGCATCCACAGCACAAATTCTTGGAAATAATGAATCCTTTGAACCTTTTACAT 357174 Query 8927 ACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTGA 8986 ||| | || |||| |||| ||| | || || ||| | | |||| | |||| | Sbjct 357173 CAAACATATATCAGAGAAGAGTTTTGTCAGGAGAATTTCAAGTAGTGAACCATCATCTTT 357114 Query 8987 TGCGCGACTTGATCGAAGCGGGCGTTTACGACGACAAAATGCGCGATGCCATCGTGGAAG 9046 || || || | |||| | | | || || | ||| | ||| | | Sbjct 357113 TGAAAGATTTAACGCAAGCAGATCTATGGGATGAAGACATGAAAAACCTTATCATTCATA 357054 Query 9047 CCAACGGCAGCGTTCAGAACATTGACGCGGTGCCTCAACACATTAAAGAGCTGTATAAAA 9106 ||| || |||| || || || | || || | || ||| | || |||| Sbjct 357053 ACAATGGTTCAATTCAAAATATCGAAAGAATTCCAAAAGAAATACGAGACTTATACAAAA 356994 Query 9107 CCGTTTGGGAAATGA-AGCAAAGCACGCTGATCGGCATGGCTGCGGATAGAGGCGCTTTT 9165 | || |||||||| || || ||| |||| ||||| || ||||| ||||| ||| Sbjct 356993 CAGTCTGGGAAATTTCAGTTAAA-ACGACGATCCAAATGGCAGCTGATAGGGGCGCATTT 356935 Query 9166 ATTGATCAGAGTCAATCTTTTAACGTGTTC--GTAGCCGCACCAACTTACGCT---TTGA 9220 |||||||| || || |||||||| | ||| || || | ||||| ||| | |||| Sbjct 356934 ATTGATCAAAGCCAGTCTTTTAA--TATTCATGTTGCTGAACCAAATTATGGAAAATTGA 356877 Query 9221 TGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGCATGTACTATTTGC 9280 || | |||||| | | ||||||||||| | ||||| || ||||| ||||||| Sbjct 356876 CATCTA---TTCATTTTCATGCATGGAAAATGGGGCTTAAAACTGGAATGTATTATTTGC 356820 Query 9281 GCACAAAACCCGCCGCTGAACCTATCAAATTTACAGTT 9318 |||||||||| || || | | || ||||||| ||| Sbjct 356819 GCACAAAACCAGCTGCCAATGCCATTCAATTTACGGTT 356782 >seq129 Length=3256488 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 52807 CAAAAACGGACATTGCGGTGCCCACCGTCGATGATCGATTTCTGGATCGTCGCCATCCAT 52866 || ||| ||||| ||||| ||||| || | |||||| |||| || || || || | Sbjct 1155883 CAGAAAGGGACACTGCGGCGCCCAGCGACTATGATCCTGAGCTGGGTCATCTCCCTCGAC 1155942 Query 52867 CCATTTCATTATTTCCACTTTGCAAAAAGCACATCGCACTTCGTCGTTGCGACCCAAATA 52926 |||| ||||||||||||| || || || || || |||||||||||| | |||| | || Sbjct 1155943 CCATCTCATTATTTCCACCTTACAGAAGGCGCAACGCACTTCGTCGCCGTGACCGAGGTA 1156002 Query 52927 ATAAAAACCGTTTCGAGCGAGTCGTGCGGGCGACAGAAA 52965 |||||| || |||| |||||| || | ||||| | ||| Sbjct 1156003 ATAAAATCCATTTCTAGCGAGAAGTTCCGGCGATATAAA 1156041 >seq429 Length=186180 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || | |||||| | |||||| || |||||||| || ||||| |||||| Sbjct 15712 CCTCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGAC 15653 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || || ||||| || || |||||||||||||| || || || || Sbjct 15652 AGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGG 15593 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || || || || | |||||||| | ||||| Sbjct 15592 ATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACC 15533 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| ||||| || | ||||| || || || ||||| || Sbjct 15532 TCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCATGTT 15483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505351979156960