Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq401 580 2e-160 seq183 132 7e-26 seq1092 87.8 2e-12 >seq401 Length=384550 Score = 580 bits (642), Expect = 2e-160 Identities = 1212/1781 (68%), Gaps = 60/1781 (3%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 ||||| ||||||| || || |||||||| || | ||| ||||| || ||||| || Sbjct 356786 GTAAATTGAATGGCATTGGCAGCTGGTTTTGTGCGCAAATAATACATTCCAGTTTTAAGC 356845 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | ||||| | | ||||| ||| ||| | ||| |||| |||| || || | | Sbjct 356846 CCCATTTTCCATGCATGAAAATGAATAGATGTCAATTTTCCATAATTTGGTTCAGCAACA 356905 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 |||||||| | || || |||||||| || || || || ||||| || ||||||| || Sbjct 356906 TGAATATTAAAAGACTGGCTTTGATCAATAAATGCGCCCCTATCAGCTGCCATTTGGATC 356965 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTT--AAAAATCTGTTTGATATCATCTGGAA 68611 | | || | ||||||||| | || || | || ||| | || || | ||||| Sbjct 356966 GTCGTTTTAACTGAAATTTCCCAGACTGTTTTGTATAAGTCTCGT--ATTTCTTTTGGAA 357023 Query 68612 GGCT--CG-TATTTTGAATGGATCCACCATCGGATAT-AATTATA---TTCTTGATCTCA 68664 || || |||||||||| || ||||| | ||| ||| ||| || || || || Sbjct 357024 TTCTTTCGATATTTTGAATTGA---ACCATTGT-TATGAATGATAAGGTTTTTCATGTCT 357079 Query 68665 TCATTCCACA-ATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAA 68723 |||| ||| | || | || | ||||||| || | | ||||| | || |||| |||||| Sbjct 357080 TCATCCCATAGATCTGCT-TGCGTTAAATCTTTCAAAAGATGATGGTTCACTACTTGAAA 357138 Query 68724 TTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 68783 ||| || || || ||||| | || || || ||| | ||||| | |||||||| Sbjct 357139 TTCTCCTGACAAAACTCTTCTCTGATATATGTTTGATGTAAAAGGTTCAAAGGATTCATT 357198 Query 68784 ATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCT 68843 |||||| |||||||| || || ||||| || |||||||| || | | ||| || | Sbjct 357199 ATTTCCAAGAATTTGTGCTGTGGATGCGGTAGGCATAGGCGCTAAAAGCAAAGAGTTACG 357258 Query 68844 AAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTAC 68903 ||| || ||| | ||||| ||||||||| ||||| |||||| || | |||| Sbjct 357259 AAGCCCGTGTTTAGAAATTTTCTCTTTTAGAGCAACCCAATTCCAAAGGTCCGTAGGTAT 357318 Query 68904 AACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTAT---ATGT 68960 |||||| | ||| ||||| | ||| || ||||| || | | ||| | | || Sbjct 357319 TTTATTCCACATATCATATTGCAAAATACCATTACTGACA---GGGCTATTTTTAAAGGT 357375 Query 68961 TTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAAT 69020 || ||||| | ||| |||| |||||| ||||| ||||| || || |||||||| Sbjct 357376 ACTGTATACACCTTCTTTTTCTGCTAATTCACAGCTTGCTTCTAAGGCTCCATAATAAAT 357435 Query 69021 TGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAA 69080 || || || || | | ||| | | ||| | | ||| || |||||||| | | Sbjct 357436 AGTCTCAAATATTTGTTGATTTAATTTAATTGCATTTTCACTTTCATATGGATAACGCAT 357495 Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140 | || |||| ||| ||||| || ||||| ||||| || || ||||| |||||| | || Sbjct 357496 TAAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTGTGTCTCATGTT 357555 Query 69141 TGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200 |||| ||| ||||||||||| ||||| ||||| | ||| |||||||| || | |||| | Sbjct 357556 TGAATTTTTAGCTTCTGGAACTGGATAGTAATTCACATCAATAATTTTGTTTAAATTTTG 357615 Query 69201 GACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAAT--CAAATCGT-CCATCTATAAC 69257 | | | |||| || ||||||| || ||||| || | | | || | || Sbjct 357616 GGTAATTGTTTTAGTGACTTCCTTTAACTTTTCAAAATTGTAAGTTTTGTCTTCATTGAC 357675 Query 69258 AAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCA--TTAGAATTTGCA 69315 |||||| || || |||| ||||||| |||||| || || || ||| || | || Sbjct 357676 AAACATGTTGAGAGCTATTGATGCTAAATTACAGACAGCCACTTCATCTTCCGAGGTG-- 357733 Query 69316 TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTA 69375 |||| || || ||||| || ||||| |||||||| || || || || ||||| ||||| Sbjct 357734 TATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATTGTGCCAAGGTTTTGTTGATTG 357793 Query 69376 CTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 69435 || ||| ||||||| | ||| || || || ||||| || || ||||| || | || | Sbjct 357794 CTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGGTGTTCCAGTCTCTACTTGTGCC 357853 Query 69436 TCGATAATAGATTTCCAAACGACCCTAGCATTTAT-TACGGTCTTG--TAAC-----GCT 69487 || || |||| |||||| || |||| | ||| |||| |||| || Sbjct 357854 TCAATTATAGCTTTCCA--------TAAAATTTGTGCACGAACTTGTTTAACATACTTCT 357905 Query 69488 TCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATC 69547 |||||| |||||||||| ||| | | || ||||| |||||||| ||| | | | Sbjct 357906 TCTCTTGTTCATATTGTTCATACAACTTCTCAAATTCTTCTCCCCAGCAGTCAGCGAGGC 357965 Query 69548 CAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT---AACTCGTTTCA 69604 ||||| | | | |||||||| | ||| || || || | ||| |||| |||| Sbjct 357966 CAGGAGAATTGTGAGGACACATGA--GACTCCA-ATTTTCGTTCTTTTCTACTCTCTTCA 358022 Query 69605 TAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTT 69663 | |||| ||| |||||||||||||| ||| || || ||||||| | |||||| || Sbjct 358023 TGAATAAATCAGGAATCCAAAGAGC-ATAGAAAAGCTCTCTGGCACGCACTTCTTCTTTC 358081 Query 69664 CCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 69723 |||||||| ||||| || || | ||| || | |||||||| |||||||||||||| ||| Sbjct 358082 CCTGTATTCTTTTTTAGGTCTAAAAATTCAAAAATATCAGCATGCCATGGTTCTAAATAA 358141 Query 69724 ATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTA 69783 || || | | || |||| ||||||||| || ||||| | ||||| ||||| || || Sbjct 358142 ATAGCAAATGCACCTGGTCTTTTATTTCCGCCTTGATCGACATATCTTGCAGTATTGTTG 358201 Query 69784 TAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTT 69843 || || || | ||| || | | ||||| || ||||||||||| | |||||| || Sbjct 358202 TACACCCTTAACATAGGGACTAAGCCATTTGAAACTCCATTTGTTCCGGCAATATATGTT 358261 Query 69844 CCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903 || | || | ||| | || | |||||| ||||| ||||| || || |||| Sbjct 358262 CCCTTAGCTCTTATACAATGAACATGTAGACCAATTCCACCTGCAGACTTTGATATTAAT 358321 Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGA 69963 || | || | || ||||| |||||||| || || |||||| |||| || | | Sbjct 358322 GCTGCTTGCTTTAGGGTATCATAGATACCCTCAATACTGTCATCTCTCATAGCAATTAAA 358381 Query 69964 AAACAGCTAGACATTTGATGATGTATA---GTTCCCGCATTAAATAATGTAGGAGATGCG 70020 ||||| ||||| | ||| || || ||| | || || | || ||| || Sbjct 358382 AAACAAGAAGACA---GCTGAGGTCTAGGTGTTGCTGCTGAGAAAAGAGTTGGACTGGCA 358438 Query 70021 TGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCAC 70080 ||||| || |||||||||| | || ||||||||| | || || | ||||| || Sbjct 358439 TGAGTAAAGTATTTTTCAGATAACAAATTGTATGTCTTGATGGCAGCATCTATGTCATCT 358498 Query 70081 TGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121 ||| || || || || || | ||| |||||||| || || Sbjct 358499 CCATGTATACCAATTGCCACTCTCATTAACATATGTTGTGG 358539 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 70135 TTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTAT 70194 ||||| || || || | ||||||||| |||||| ||||||||| ||||||||||||||| Sbjct 358659 TTATTGTTAATCTTGAGAAGGTATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 358718 Query 70195 GAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTAT 70240 |||||| || || || | ||| | |||| || | | || |||| Sbjct 358719 TTAAAGTCCCTGTCATATACAATTGCTGAATCTAATCTGTCTTTAT 358764 >seq183 Length=738700 Score = 132 bits (146), Expect = 7e-26 Identities = 133/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 |||||||| || | || ||||||||||||||| | ||||| || || |||||||| Sbjct 171070 TATGTATCAATGAGTAGGGAATACATTTCTGAATGTACATTTTCCATTGCAATCTGAAAG 171011 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006 || || |||||||| ||||| || | |||||||||| | || ||||| ||| |||| Sbjct 171010 CCATAGAAACATCTGGCTTCTGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGATTT 170951 Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAA 40059 ||||| ||||| ||||| || ||||| || ||||||||||| ||||| || Sbjct 170950 TCATTGACTATGCCATCTGATGCAGCAAAGAAAGCCAATACATGCTTAATGAA 170898 Score = 127 bits (140), Expect = 3e-24 Identities = 163/223 (73%), Gaps = 9/223 (4%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||| | ||| || || || || ||||||||||| || | ||||| Sbjct 171511 CCTCATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTCCTCTCTTTT 171452 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| | ||||||| |||||| ||||| || || || || || ||||||| Sbjct 171451 TCAGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAGCGGCAAATG 171392 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCA-TTATG-----TATCCACTTCTGTGCCCAAT 39812 | |||| ||| || || | |||| || | || |||||||| | ||||||| Sbjct 171391 CTACAATTCTTTCACC---AAATGTAGCAGATTTGCTTGCTATCCACTGGAGAGCCCAAT 171335 Query 39813 CAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | || |||||||||||||| || | || |||| |||||| || Sbjct 171334 CTGCCTTCTTCTTTACACATGGAAGAGTCTCTACAGCATTGAA 171292 >seq1092 Length=556928 Score = 87.8 bits (96), Expect = 2e-12 Identities = 240/366 (66%), Gaps = 5/366 (1%) Strand=Plus/Plus Query 162496 ATGACCCCTATTAATCCTATGCTAGCAGAATCATGCGATTCCGTTAACAAGGCATTTAAA 162555 ||||| |||||| || ||| ||||||| | || | || || | | ||| | ||| Sbjct 531360 ATGACTCCTATTCTGCCAATGTTAGCAGAGGCCTGTAAATCAATTGAAATGGCTATGAAA 531419 Query 162556 AAATTTCCATCTGGGATGTTTGCAGAAGTCAAATATGATGGTGAACGAGTGCAAGTTCAT 162615 || | |||| ||| |||||| | ||| | || ||||||||||| || || ||||||||| Sbjct 531420 AAGTGTCCAAATGGTATGTTTTCTGAAATAAAGTATGATGGTGAGCGTGTCCAAGTTCAT 531479 Query 162616 AAAAACAATAACAAGTTTGCGTTCTTTAGTAGAAACATGAAACCCGTTTTACAACACAAA 162675 ||||| ||| ||||| || ||| | || | || || || | ||| ||| Sbjct 531480 AAAAAAGGTAAGGAGTTTAAGTATTTTTCTCGAGCTCTAAAGCCAGTAATGTCACATAAA 531539 Query 162676 GTTGATTATCTAAAAGAATACCTTCCCATAGCATTCAAAAAAGCTACATCTATTATCTTG 162735 || || || | ||||| || | || |||||| ||||| | ||| || ||| Sbjct 531540 GTAAATCATTTTAAAGACTATTTACCACAAGCATTTCCAAAAGGGGAAGATATGATTTTG 531599 Query 162736 GATTCTGAAATTGTTCTAGTCGACG----AACATAATGTACCACTTCCGTTTGGAAGTTT 162791 ||| | ||| | | | || || | |||| | |||| | |||||||| | ||| Sbjct 531600 GATGCAGAAGTATTAATGGTAGATGTGAAAACAGGA-AAACCATTACCGTTTGGCACTTT 531658 Query 162792 AGGAATACATAAAAAGAAAGAATATAAAAACTCTAATATGTGTTTGTTCGTGTTTGATTG 162851 ||| |||||||| || ||| | |||| | | | | || || | | | ||||| || Sbjct 531659 AGGTGTACATAAACAGTCAGAGTTTAAAGATGCCCAAGTATGCTTATACATATTTGACTG 531718 Query 162852 TTTATA 162857 ||| || Sbjct 531719 TTTGTA 531724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686845707426720