Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq183 123 2e-23 seq1173 102 6e-17 >seq183 Length=738700 Score = 123 bits (136), Expect = 2e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || ||||| || |||||||| || || ||||||||||||||| ||||| |||| Sbjct 170910 GTATTGGCTTTCTTTGCTGCATCAGATGGCATAGTCAATGAAAATCTGGTTGAAAGGTTC 170969 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | ||||| || ||| || ||||||| ||||||| ||||| ||||| ||||| || ||| Sbjct 170970 TCCCAAGAGGTACAAGTAACAGAAGCCAGATGTTTCTATGGCTTTCAGATTGCAATGGAA 171029 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCA 44015 ||| | ||||| |||||||| || || || ||||| ||||||| Sbjct 171030 AATGTACATTCAGAAATGTATTCCCTACTCATTGATACATACATCA 171075 >seq1173 Length=128733 Score = 102 bits (112), Expect = 6e-17 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 41010 ATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCAT 41069 ||| || |||| | ||||||||| | || | || |||||||| |||||||| ||| Sbjct 62803 ATATTAATGTGTTCCTGGAACCCATCTGATCTTGATAAAATGGCATTACCACCTTGCCAT 62744 Query 41070 TTGTTATG-TCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATC 41128 | || || ||||||| | || |||| | |||| || |||| ||||||||||||| Sbjct 62743 T-GTCTTGCTCAGTTTCATGTAGCTAATGATAAACTCTCCTGTCTATTGTATCAAAGAAG 62685 Query 41129 AGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATAT 41188 | ||| |||||||| || || || ||||| || || |||||||| | | || |||| Sbjct 62684 TGCTGATATGGGACTTGGTGTACCTTTTAATATTGCCAGTTATGCCATATTGACACATAT 62625 Query 41189 GATTGCACAC 41198 ||| || ||| Sbjct 62624 GATAGCTCAC 62615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397420406324740