Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq326 347 1e-90 seq401 223 3e-53 seq429 143 2e-29 seq53 95.1 1e-14 >seq326 Length=503882 Score = 347 bits (384), Expect = 1e-90 Identities = 808/1197 (68%), Gaps = 41/1197 (3%) Strand=Plus/Minus Query 49350 TTCATAGCGTTTAACAAGTCGCCGTTGTCGGCGTCAATTTCCCAAGCAAACAGTCCGCCC 49409 ||||| ||||| || | ||| ||||| || ||||| |||||||| || |||| || || Sbjct 281637 TTCATTGCGTTCAATATGTCACCGTTATCTGCGTCTATTTCCCACGCGAACAAACCACCT 281578 Query 49410 AGATTCAAATCCAGC--ACGTATCGACTCTTGTCGACTACCGAG-TCGACGCTATCGTAA 49466 || | || || | |||||| || || ||| || || ||| || | ||||| Sbjct 281577 AGGT--AATTCTTTCTTACGTATTTACCTTTCTCGGTAACGGATCTCG-CGTTGTCGTAT 281521 Query 49467 CTGATCAAGT-CACCGGTGGACGCTTTAAAAACGTACGCCGCTTTAGCGACAGTGTCGTA 49525 | | ||||| | || || || | ||| || || || || |||| || || | ||||| Sbjct 281520 GTAA-CAAGTTCCCCTGTAGATGGTTTGAACACATAAGCAGCTTGGGCAACGTTATCGTA 281462 Query 49526 TGTGTACTTGTATTGCGCCGGCAACAAA-CTGTTTACAATTTGCCTGTAATCCACTACGC 49584 | ||| ||| | | ||| | ||| |||||| ||||||||| || || | Sbjct 281461 GTGGAACTCCCATTTGTTTTG-AGCAATGCCATTTGCAATTTCCCTGTAATCGACCACAC 281403 Query 49585 CGTCCTCCCAAGTGCCCACGACAGGACCACCGGCAACGCCTGTGAACGGGTTGTCATCTG 49644 | |||| ||| |||||| | ||| || || | || ||||| || || |||||| Sbjct 281402 CATCCTGCCATGTGCCCTTGCAAGGTCCTGTTGCGATCCCCGTGAAAGGATTACCATCTG 281343 Query 49645 TGTAATCGTCGACTGCGGTCCAACCGCGGCCGTACATTGCCACTCCGATGACAATTTT-T 49703 | |||| || ||| ||||||| || || || |||||||| || || | ||||||||| | Sbjct 281342 TATAATTGTGTACTCCGGTCCACCCACGTCCATACATTGCAACACCTACGACAATTTTCT 281283 Query 49704 TCGC-TAGCCACGTTCTGTTTGAGC----AGCTCGCGAACAGCGGTGTCAGTGGTGTACA 49758 ||| | ||| || |||| || | ||||| || ||| ||||| || Sbjct 281282 TCGGGTTTACACCTT------GAGCCAATAGGTACTGAACACCGAAGTCTGTGGTATAAG 281229 Query 49759 GTTCGCCGGCGTTCCACAGCGGCGCATACAAATTGGTTTGGTAACCTAAATCGACATTGG 49818 ||| | ||||||| || ||||||| |||||| | |||||| |||||| Sbjct 281228 TTTCCTTTGAGTTCCACTCGGGAGCATACAGTGCGGTTTGATGACCTAATGTATCATTGG 281169 Query 49819 ACCAAGCACCTTTAAAATCGTACGACATTAGAAAAATTTGATCTAAATATTGCTGGGC-G 49877 |||||||||| ||||| ||||| ||| | |||||| || || | || | ||| || | Sbjct 281168 ACCAAGCACCCTTAAAGTCGTAGCTCATAACAAAAATATGGTCCATGTAATTCTGCGCAG 281109 Query 49878 CTAGCATAGTCGACCAACTCGATTTTGTCATAGCCGGCGCCAATAGCTGAAGTCAAAA-G 49936 || ||||| || | | ||||||||| | || || | ||||||||| || || | Sbjct 281108 CTTTG-TAGTCTACAACTTGGATTTTGTCCCATCCAGCACTAATAGCTGATGTTAATTCG 281050 Query 49937 CAGTTTACGACCGGTCTGCTC-TTGCAC--TTCGTCTAACATTTTGCGCAACTCTTTAAG 49993 | || | || | || ||| | ||||| | ||||| || | ||| || | Sbjct 281049 TACTTCTTGCCCATT----TCATTGGATAATTCGTTAAGCATTTCTCGAAGCTCCTTCAT 280994 Query 49994 CAAAATCACGTACGTGGCACCGTCATTGTCAACATCTCCCAAAATCGGGTTGGCGCCTTT 50053 || | || || |||| || || | || || | ||||||| ||||| || Sbjct 280993 TAATAAAACATAGACTTCACCATCCTTAGGACCA---CCAAGTGTCGGGTTTGCGCCCTT 280937 Query 50054 GCCGCCCGGAAACTCCCAGTCAATGTCGACGCCGTCGAAAAATTTCCAAACTTGTAAAAA 50113 || || || || |||||||| ||||| || || |||||||||||||| ||| | || Sbjct 280936 ACCTCCAGGGAATTCCCAGTCTATGTCTACACCATCGAAAAATTTCCAGGTTTGAAGGAA 280877 Query 50114 TTCGCGAACCGACTCCACAAA---CACTTTTCTGATCGCGTCATCGTGCATGAAAAAGAA 50170 || || || || | || | || | | | | ||||||| | ||| ||||| Sbjct 280876 GTCTTTTACAGAGTCAATGAAACGCGCTCTCTTTACCTTGTCATCG---AAGAAGAAGAA 280820 Query 50171 TGGATCCGACAGAGTCCAACCGCCGATCGAAGGCAAAATTTTAATGTGCGGATGCGCCTT 50230 |||||| | || ||||||||||| || ||||| | ||| || | | || || | Sbjct 280819 TGGATCAGCGAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGATCAGGTCTTGCTTG 280760 Query 50231 TTTGACGGCCATTAACTGACCAAAATTGCCTTTATACGGTTCGTTCCACGCGGACACTCC 50290 ||| | | ||| ||||| ||||| |||||||| || ||||| ||||| | || | ||| Sbjct 280759 TTTTAAAGACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGAAAGTCC 280700 Query 50291 TTTTTGCGGCTTCTGTATGGCGGCCCAAGGGTCGTGTATGGACACTTTAAAATCTTCCCG 50350 |||||| || || |||| ||| ||||| |||||||| ||||| |||||||| ||||| || Sbjct 280699 TTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACTTTAAAGTCTTCTCG 280640 Query 50351 TCCCGCACACGATCGCTGCAACGCCTCGAAACTGCCGGTGATGGTTTTGAGGCTGTCGTT 50410 || || |||| ||| ||||| | |||||| || || ||| | |||||||| Sbjct 280639 GCCACTGCAAGATCTCTGTAACGCTTGGAAACTTCCCTCAATTTCTTTCAAACTGTCGTT 280580 Query 50411 GATACCGTCGCCGCCGCAAATGGGAATGAAACCGTACAACAGATGAGTTAAATTTGGCAC 50470 ||| || || || || ||||| || || ||||||||||| |||||||||||||| || | Sbjct 280579 GATTCCATCACCACCACAAATCGGGATAAAACCGTACAAAAGATGAGTTAAATTCGGGAT 280520 Query 50471 AGGCACTTTGTCCGCTGGAAAGTTGCGACCGTATACTCCCCACTCAACAAAGTATGC 50527 || | |||| | ||| | || | | || |||||||| ||||||||||| || Sbjct 280519 TGGTATACGGTCCACGGGATACTTTCTAGGATAAACTCCCCATTCAACAAAGTAAGC 280463 >seq401 Length=384550 Score = 223 bits (246), Expect = 3e-53 Identities = 1086/1709 (64%), Gaps = 59/1709 (3%) Strand=Plus/Plus Query 130406 ttttCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || || |||||||||||||||| || || || ||||||||||||||||| || Sbjct 356777 TTGTCAACCGTAAATTGAATGGCATTGGCAGCTGGTTTTGTGCGCAAATAATACATTCCA 356836 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGAT-GCTGCACATTGTTTGGTAATTGGG 130524 ||||| || || ||||| | ||| | || || | || || | || ||||| || Sbjct 356837 GTTTTAAGCCCCATTTTCCATGCATGAAAATGAATAGATG-TCAATTTTCCATAATTTGG 356895 Query 130525 TT--GCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCA 130582 || || || ||||| || | || || |||||||||||| |||||||| || || Sbjct 356896 TTCAGCAACATGAATA--TTAAAAGACTGGCTTTGATCAATAAATGCGCCCCTATCAGCT 356953 Query 130583 GCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATG 130642 ||||| | || | | |||||| | || ||||| | || ||||||| || | || Sbjct 356954 GCCATTTGGATCGTCGTTTTAACTGAAATTTCCCAGACTGTTTTGTATAAGTCTCGTATT 357013 Query 130643 TGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGC 130702 | ||| || || | | || ||||| ||| ||||| || || ||| | Sbjct 357014 TCTTTTGGAATTCTTTCGATATTTTGAATTGAACCATTGTTATGAATGATAAGGTTTTTC 357073 Query 130703 ATACTTTTATCGTACA-ATCCAAGC-TGTACAAGATCTTTTACCAAATGATTATTAATGA 130760 || || ||| | | ||| || || | |||||| | | ||||| || | | Sbjct 357074 ATGTCTTCATCCCATAGATC--TGCTTGCGTTAAATCTTTCAAAAGATGATGGTTCACTA 357131 Query 130761 TTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGG 130820 |||||| || || | || || | ||| || ||||| || || |||||||||| Sbjct 357132 CTTGAAATTCTCCTGACAAAACTCTTCTCTGATATATGTTTGATGTAAAAGGTTCAAAGG 357191 Query 130821 ATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAG-- 130878 |||| || || || | ||||||||||| | |||||| ||||| | | |||| || Sbjct 357192 ATTCATTATTTCCAAGAATTTGTGCTGTGGATGCGGTAGGCAT---AGGCGCTAAAAGCA 357248 Query 130879 -AGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAG 130937 ||| |||||||| ||||| | | ||||| || | || |||||| ||| || Sbjct 357249 AAGAGTTACGAAGCCCGTGTTTAGAAATTTTCTCTTTTAGAGCAACCCAATTCCAAAGGT 357308 Query 130938 AGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGG 130997 |||||| | || |||||||||||| |||| | || || |||||| | || || Sbjct 357309 CCGTAGGT---ATTTTATTCCACATATCATATTGCAAAATACCATTACTGACAGGGCTAT 357365 Query 130998 ATTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTC 131057 || || | ||| | ||||| || | || ||| ||||| || |||| Sbjct 357366 TTTTAAAGGTACTGTATACACCTTCTTTTTCTGCTAATTCACAGCTTGCTTCTAAGGCTC 357425 Query 131058 CGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAG 131117 | |||||||| || || ||||||| |||||||| | || | | || || || | Sbjct 357426 CATAATAAATAGTCTCAAATATTTGTTGATTTAATTTAATTGCATTTTCACTTTCATATG 357485 Query 131118 GAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCT-- 131175 || | |||||||| || | || || | ||| || | |||| || | ||||| Sbjct 357486 GATAACGCATTAAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTGT 357545 Query 131176 -----ATGTTTTAAATTACATTTACGCGAACATTCGGTGGGATAAAGGTTAATGTCAATT 131230 |||||| || || | | | |||| ||||| || | ||||| Sbjct 357546 GTCTCATGTTTGAATTTTTAGCTTCTGGAAC-------TGGATAGTAATTCACATCAATA 357598 Query 131231 ATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAAC 131290 |||||||||||||| | | ||| ||||| || || || || |||| Sbjct 357599 ATTTTGTTTAAATTTTGGGTAATTGTTTTAGTGACTTCCTTTAACTTTTCAAAAT----- 357653 Query 131291 GTGCCAGTT---TCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACT 131347 || |||| || || ||||| || | | |||||| || | |||||| || Sbjct 357654 -TGTAAGTTTTGTCTTCATTGACAAACATGTTGAGAGCTATTGATGCTAAATTACAGACA 357712 Query 131348 GCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATG 131407 ||| ||| || | | || | |||||||| | ||| | ||| || | || || Sbjct 357713 GCCACTTCATCTTCCGAGGTGTATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATT 357772 Query 131408 GTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGG 131466 ||||| | ||||||||||||||||| | | ||||| ||| || |||| ||| | || Sbjct 357773 GTGCCAAGGTTTTGTTGATTGCTTTT-TCTGTTACATGAGTCTTTATACAGCATAAATGG 357831 Query 131467 CGTGCCCGTTTCGACTTGAGTTTCAATAAT--GTATCGAAAGAGTTTTCGAGCAGACAAT 131524 || || || || ||||| | ||||| || | || | | | ||| | ||| | | Sbjct 357832 TGTTCCAGTCTCTACTTGTGCCTCAATTATAGCTTTCCATAAAATTT--GTGCACGAACT 357889 Query 131525 TGATATTTGTA-TTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCC 131583 || | || || | | || ||| || | ||| |||||| | ||||| | || || Sbjct 357890 TGTTTAACATACTTCTTCTC-TTGTTCATATTGTTCATACAACTTCTCAAATTCTTCTCC 357948 Query 131584 AAACGAACTGT---CCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTT 131640 | | | || | | ||| | | | |||||||| || ||| |||| Sbjct 357949 ---CCAGCAGTCAGCGAGGCCAGGAGAATTGTGAGGACACATGAGACTCCAATTTTCGTT 358005 Query 131641 CTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGC 131700 || ||| |||| |||||| || ||||| || | ||| | || || || || ||||| || Sbjct 358006 CTTTTCTACTCTCTTCATGAATAAATCAGGAATCCAAAGAGCATAGAAAAGCTCTCTGGC 358065 Query 131701 TTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATG 131760 |||||| | || || | ||||| | | |||||| || ||||| || ||||| Sbjct 358066 ACGCACTTCTTCTTTCCCTGTATTCTTTTTTAGGTCTAAAAATTCAAAAATATCAGCATG 358125 Query 131761 CCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATG 131817 ||| ||||| ||||| | || | ||| ||| | ||| |||||||||| |||| Sbjct 358126 CCATGGTTCTAAATAAATAGCAAATGCACCTGGTCTTTTATTTCCGCCTTGATCGACATA 358185 Query 131818 ACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGT 131877 | | | |||||||| || | ||||| || | || || || | |||||| || Sbjct 358186 TCTTGCAGTATTGTTGTACACCCTTAACATAGGGACTAAGCCATTTGAAACTCCATTTGT 358245 Query 131878 GCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCC 131937 | ||| || | || || ||||| || ||||| | || ||||| || || | Sbjct 358246 TCCGGCAATATATGTTCCCTTAGCTCTTATACAATGAACATGTAGACCAATTCCACCTGC 358305 Query 131938 GTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGC 131997 | || || |||| ||| || |||| || | ||||||||| || | ||||| | Sbjct 358306 AGACTTTGATATTAATGCTGCTTGCTTTAGGGTATCATAGATACCCTCAATACTGTCATC 358365 Query 131998 GGCAATGTCGACTAAAAAGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAA 132057 || | | |||||| ||||| |||| ||| | | ||| | ||||| || | Sbjct 358366 TCTCATAGCAATTAAAAAACAAGAAGACAGCTGAGGTCTAGGTGTTGCTGCTGAGAAAAG 358425 Query 132058 TGTGGGGCTGGCGTGTGTAAAAAGTTTTT 132086 || || ||||| || ||||| ||||| Sbjct 358426 AGTTGGACTGGCATGAGTAAAGTATTTTT 358454 >seq429 Length=186180 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || ||| ||||| |||| ||||| || || || || || |||||| | Sbjct 15712 CCTCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGAC 15653 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | ||| | ||||| || |||||||| ||| |||| | ||||||||| || || || Sbjct 15652 AGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGG 15593 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| ||||||| |||| |||| | |||||| | ||| || || Sbjct 15592 ATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACC 15533 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || | || ||||| || |||||||||||||| ||||| Sbjct 15532 TCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCAT 15486 >seq53 Length=2198565 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 || || || | ||| | || || || |||||||| |||||||| | | |||| | Sbjct 1830744 CGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCA 1830685 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||| || || || | |||||||| || || || || || | ||| || || Sbjct 1830684 TCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTG 1830625 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| || ||| | |||| | ||||||| | ||||||||||| || || Sbjct 1830624 TCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATG 1830565 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| ||||| |||||||| || ||||| ||||| Sbjct 1830564 GTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCAT 1830530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424896345530976