Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq401 107 2e-18 >seq401 Length=384550 Score = 107 bits (118), Expect = 2e-18 Identities = 254/381 (67%), Gaps = 11/381 (3%) Strand=Plus/Plus Query 118515 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 118574 |||| ||| ||| || | |||||| ||||| | |||||||| | |||||||| || Sbjct 357497 AAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTGTGTCTCATGTTT 357556 Query 118575 GACTTCCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 118633 || || ||| ||| | | ||||| ||||| ||| |||| | |||| ||||| Sbjct 357557 GAATTTTTAGCT-TCTGGAACTGGATAGTAATTCACATCAATAATTTTGTTTAAATTTTG 357615 Query 118634 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT---CTTC 118690 ||| | || |||| ||| | | |||||| |||| || ||| | |||| Sbjct 357616 GGTAATTGTTTTAGTGACTTCCTTTAACTTTTC------AAAATTGTAAGTTTTGTCTTC 357669 Query 118691 ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 118750 ||||||| || | || || ||||| || | |||||| |||| ||||| | Sbjct 357670 ATTGACAAACATGTTGAGAGCTATTGATGCTAAATTACAGACAGCCACTTCATCTTCCGA 357729 Query 118751 AGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 118810 ||||| |||| |||||| ||||| | || || ||||| ||||| | ||| | ||| Sbjct 357730 GGTGTATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATTGTGCCAAGGTTTTGTTG 357789 Query 118811 ATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 118870 ||| ||| ||||||| | || || || ||||| |||| || || ||||| ||| Sbjct 357790 ATTGCTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGGTGTTCCAGTCTCTACTTG 357849 Query 118871 GGACTTGAGAATAGCCTTCCA 118891 | || | ||||| ||||| Sbjct 357850 TGCCTCAATTATAGCTTTCCA 357870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618378396726880