Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq401 188 8e-43 >seq401 Length=384550 Score = 188 bits (208), Expect = 8e-43 Identities = 898/1405 (64%), Gaps = 38/1405 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||||| ||| | ||||| || ||||| ||||| || ||||| ||| ||| | Sbjct 358539 CCACAACATATGTTAATGAGAGTGGCAATTGGTATACATGGAGATGACATAGATGCTGCC 358480 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | |||||||| | | | || || || | ||| || | ||||| || ||| Sbjct 358479 ATCAAGACATACAATTTGTTATCTGAAAAATACTTTACTCATGCCAGTCCAACTCTTTTC 358420 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || | ||||| ||||| || |||| ||| || | || || | | || ||| Sbjct 358419 TCAGCAGCAACACCTAGACCTCAGCTGTCTTCTTGTTTTTTAATTGCTATGAGAGATGAC 358360 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || | |||||||||| || || | | | || ||| ||||||| || || Sbjct 358359 AGTATTGAGGGTATCTATGATACCCTAAAGCAAGCAGCATTAATATCAAAGTCTGCAGGT 358300 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521 || ||||| | || | ||| | | ||||| || | | |||| || |||||| Sbjct 358299 GGAATTGGTCTACATGTTCATTGTATAAGAGCTAAGGGAACATATATTGCCGGAACAAAT 358240 Query 104522 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 104581 || ||| |||| | | || ||| | | || | ||| || || | ||||| Sbjct 358239 GGAGTTTCAAATGGCTTAGTCCCTATGTTAAGGGTGTACAACAATACTGCAAGATATGTC 358180 Query 104582 AATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 104637 |||||| || | |||| || | | || | ||| | || |||||||| || Sbjct 358179 GATCAAGGCGGAAATA-AAAGACCAGGTGCATTTGCTATTTATTTAGAACCATGGCATGC 358121 Query 104638 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC- 104696 ||||| | || || | || | || ||| | || || | ||| |||| Sbjct 358120 TGATATTTTTGAATTTTTAGACCTAAAAAAGAATACAGGGAAAGAAGAAGTGCG-TGCCA 358062 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 | || || |||| ||||| |||||||| ||| | |||||||||||||| || ||| | Sbjct 358061 GAGAGCTTTTCTATGCTCTTTGGATTCCTGATTTATTCATGAAGAGAGTAGAAAAGAACG 358002 Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAG 104815 |||||| |||| | ||||| |||| | ||||| ||| | || ||| | ||| || Sbjct 358001 AAAATTGGAGTCTCATGTGTCCTCACAATTCTCCTGGCCTCGCTGACTGCTG-GGGAGAA 357943 Query 104816 GAGTTTGA--AGCCCTTTACACAAAGT--ACGAG-GAAGAAG---GTCGGGCGACTGCGA 104867 || ||||| || | | |||| | || || ||||||| || | | | || Sbjct 357942 GAATTTGAGAAGTTGTATGAACAATATGAACAAGAGAAGAAGTATGTTAAACAAGTTCG- 357884 Query 104868 CGGTGC-CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 ||| || | | | ||||||||||| | || | ||| |||||||| ||| Sbjct 357883 ---TGCACAAAT-----TTTATGGAAAGCTATAATTGAGGCACAAGTAGAGACTGGAACA 357832 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 |||| ||||| || |||||| | |||||| ||| || |||||| | || | || Sbjct 357831 CCATTTATGCTGTATAAAGACTCATGTAACAGAAAAAGCAATCAACAAAACCTTGGCACA 357772 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 || || || ||||||||| |||||||| | |||| || ||||||| |||| Sbjct 357771 ATTAAATGTAGCAATCTCTGCACAGAAATTGTAGAATACACCTCGGAAGATGAAGTGGCT 357712 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT 105106 || ||||| | |||||||| |||||| || || ||| || ||||||| || | Sbjct 357711 GTCTGTAATTTAGCATCAATAGCTCTCAACATGTTTGTCAAT--GAAGACAAA-ACTTAC 357655 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 ||| |||||| | | ||||| || ||||| | ||| |||| |||||| | ||||| Sbjct 357654 AATTTTGAAAAGTTAAAGGAAGTCACTAAAACAATTACCCAAAATTTAAACAAAATTATT 357595 Query 105167 GATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 105225 ||| |||| || || ||| ||| ||| || || || ||||||||| | ||||| Sbjct 357594 GATGTGAATTACTATCCAGTTCCAGA-AGCTAAAAATTCAAACATGAGACACAGACCAAT 357536 Query 105226 TGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTC 105285 ||| | |||||||| ||| | || ||| |||| || | || | ||| ||| Sbjct 357535 TGGGATTGGTGTTCAAGGTTTGGCTGATACATTCGTTTTAATGCGTTATCCATATGAAAG 357476 Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345 || | || | || | ||| | ||||||||||| || ||| | | || | || Sbjct 357475 TGAAAATGCAATTAAATTAAATCAACAAATATTTGAGACTATTTATTATGGAGCCTTAGA 357416 Query 105346 GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 105405 || || | || || ||||| || ||| ||| |||||| | | || | Sbjct 357415 AGCAAGCTGTGAATTAGCAGAAAAAGAAGGTGTATACAGTACCTTTAAAAATAGCCCTG- 357357 Query 105406 TTCACAAGGGGTGCTT--CAATTTGATATGTGGGAAGGTGAGACC-AAGCTTCACTACGA 105462 ||| | ||| || |||| |||||||| |||| | ||| | | | | | Sbjct 357356 -TCAGTAATGGTATTTTGCAATATGATATGT-GGAATAAAATACCTACGGACCTTTGGAA 357299 Query 105463 CTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 |||| ||||| || || || | | || ||||||||| | | || | || Sbjct 357298 TTGGGTTGCTCTAAAAGAGAAAATTTCTAAACACGGGCTTCGTAACTCTTTGCTTTTAGC 357239 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 || ||||| || || ||||| |||||||| | || |||||||||| ||||||||| | Sbjct 357238 GCCTATGCCTACCGCATCCACAGCACAAATTCTTGGAAATAATGAATCCTTTGAACCTTT 357179 Query 105583 CACGACGAACATCTATCTGAGAAGA 105607 || | ||||| |||| ||||||| Sbjct 357178 TACATCAAACATATATCAGAGAAGA 357154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583207227495520