Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq53 165 9e-36 seq429 158 1e-33 seq578 100 3e-16 >seq53 Length=2198565 Score = 165 bits (182), Expect = 9e-36 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || || || ||||| || || || || || || || | Sbjct 1830757 AATGCAAATTTTCGTTAAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTC 1830816 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| |||| | || ||||||||||| |||||||| || ||||| |||||||| Sbjct 1830817 TGACACCATTGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCA 1830876 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| || |||||||| ||||| | || |||| || ||||| ||||||| || Sbjct 1830877 GCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAA 1830936 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | ||||||||||| || |||||||| || || ||||| Sbjct 1830937 CATTCAAAAGGAATCAACACTTCATCTTGTGTTACGTCT 1830975 Score = 158 bits (174), Expect = 1e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||| ||||| || || || ||||| || || || || || | || ||||| | Sbjct 1830526 TAAAATGCAGATCTTCGTAAAAACTCTTACGGGAAAAACCATCACATTAGAAGTTGAACC 1830585 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 || | ||||| |||| | || |||||||| ||||||||||| || ||||| ||||| Sbjct 1830586 TTCAGACACCATTGAAAATGTTAAAGCTAAAATCCAGGACAAGGAAGGTATTCCACCAGA 1830645 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 |||||| ||||| || |||||||| ||||| | || |||| || ||||| ||||||| Sbjct 1830646 CCAGCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTA 1830705 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 || | |||||||| || || |||||||| || || ||||| Sbjct 1830706 CAACATTCAAAAGGAGTCAACACTTCATCTTGTGTTACGTCT 1830747 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || || || || || || || || | |||||||| | Sbjct 1830985 AATGCAAATTTTTGTTAAAACACTGACAGGAAAAACCATCACATTGGAGGTTGAACCTTC 1831044 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| |||| | || |||||||| || |||||||| || ||||| || ||||| Sbjct 1831045 AGACACCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCA 1831104 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| || || ||||| |||||| | || |||| || || || ||||||| || Sbjct 1831105 GCAACGTCTTATCTTCGCTGGAAAGCAATTGGAAGATGGCCGAACGCTGTCAGACTACAA 1831164 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| || | ||||| || | ||||| | ||||| Sbjct 1831165 CATTCAAAAGGAATCAACCTTGCATCTTGTACTCCGTCTGAGAGGTGG 1831212 >seq429 Length=186180 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || ||||| || || || ||||| ||| | Sbjct 15486 ATGCAGATCTTTGTGAAAACCCTCACGGGTAAGACCATCACCCTAGAGGTGGAGGCCTCC 15545 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| ||||||| || || ||||| ||||||||||| || || ||||| Sbjct 15546 GACACTATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCTGACCAA 15605 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| |||||||| ||||| || |||| |||||||| | |||||||| Sbjct 15606 CAGCGTTTGATTTTCGCTGGTAAACAACTTGAAGATGGGCGTACCCTGTCCGACTATAAC 15665 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || || | || ||| | ||||| || || Sbjct 15666 ATCCAGAAGGAATCTACACTACACTTGGTGTTGAGGCTTCGTGGAGG 15712 >seq578 Length=1472074 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || || ||||| ||||||||||||||||| | Sbjct 656041 ATGCAGATCTTCGTAAAAACTCTCACGGGGAAGACCATTACTCTTGAGGTTGAACCCTCG 656100 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| | || ||||||||||| ||||| || ||||| |||||||| || Sbjct 656101 GATACCATCGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAA 656160 Query 27526 CAG 27528 ||| Sbjct 656161 CAG 656163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570258016989760