Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq429 136 2e-27 seq53 107 1e-18 seq129 105 4e-18 >seq429 Length=186180 Score = 136 bits (150), Expect = 2e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | ||||||||| || || || ||||| || |||||||| || || Sbjct 15712 CCTCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGAC 15653 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||||||||||||||| || || || |||||||||||||| || || Sbjct 15652 AGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGG 15593 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||||||| || |||||| || | | || ||||| | |||||| Sbjct 15592 ATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACC 15533 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | ||| || || ||||| || | ||||||||||| ||||||||||| Sbjct 15532 TCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCATGTT 15483 >seq53 Length=2198565 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| ||||| | ||| || || ||||||||||||||| || |||||| Sbjct 1830756 CCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAA 1830697 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | || || || ||||| || | ||| || ||||| || || Sbjct 1830696 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGA 1830637 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| ||| | |||||| | ||| |||||| || || Sbjct 1830636 ATACCTTCCTTGTCCTGGAT-TTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAAC 1830578 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||| | || || ||||| || || | ||||| || || |||||||| || Sbjct 1830577 TTCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCATTTT 1830527 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| ||||| | ||| || || |||||||||||||| || |||||| Sbjct 1830984 CCTCCCCTGAGACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAA 1830925 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | || || || ||||| || | ||| || ||||| || || Sbjct 1830924 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGA 1830865 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| | ||| || | ||| ||||| | ||||| Sbjct 1830864 ATACCTTCCTTGTCT-TGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCAC 1830806 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||| || || | ||||| || ||||| ||||| Sbjct 1830805 TTCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| ||||| | || | ||| | || |||||||||||||| || ||||| Sbjct 1831213 GCCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGA 1831154 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || ||||| | ||||| | ||| || || || || || | ||| || ||||| || || Sbjct 1831153 CAGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGTGG 1831094 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCA 34657 | || ||||||||| ||| ||| | |||||| | ||| |||||| || | Sbjct 1831093 AATACCTTCCTTGTCTTGGAT-TTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAA 1831035 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || ||||| || || | ||||| |||||||| ||||| Sbjct 1831034 CCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCAT 1830986 >seq129 Length=3256488 Score = 105 bits (116), Expect = 4e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 47108 TCTGAAGCTGCTCGTTTGAACACTTTTAAAGATTGGCCTCGTGGTTTGCGTCAGAGACCA 47167 || || ||||||||| | ||| ||| ||||||||| | || |||| || | || Sbjct 1155750 TCCGAGGCTGCTCGTCTTCGCACCTTTGCCGATTGGCCTAGAAGTATGCGCCAAAAGCCC 1155691 Query 47168 AAAGAGTTAGCGGACGCGGGCTTCTTTTATACTGGTGAAGGTGATAAAACGAAGTGTTAT 47227 |||| | ||||| || ||||| || || || ||| | || || ||||| || || | | Sbjct 1155690 GAAGAACTGGCGGAAGCTGGCTTTTTCTACACGGGTCACGGCGACAAAACCAAATGCTTT 1155631 Query 47228 TATTGTGATGGTGGTCTGAGAGATTGGAACGAAGAAGATATACCTTGGGAGGAGCACGCT 47287 || |||||||| || |||| || ||| | | || || | || |||||| | ||||| Sbjct 1155630 TACTGTGATGGGGGCCTGAAGGACTGGGAAAATGACGACGTCCCATGGGAGCAACACGCC 1155571 Query 47288 CGTTGGTTTGATCGTTGTGTCTACGTTAAATTGGTAAAAGG 47328 ||||||||||| || || | ||||| | || || ||||| Sbjct 1155570 CGTTGGTTTGACCGATGCGCTTACGTCCAGTTAGTGAAAGG 1155530 Score = 89.7 bits (98), Expect = 3e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 46829 TGGCCCGTCACTTTTATTACACCCGAAGTGATGGCACGTAACGGATTTTATTATCTTGGA 46888 ||||| || || ||||| | || ||| | | || | || ||||||||||| || || Sbjct 1156053 TGGCCAGTAACGTTTATATCGCCGGAACTTCTCGCTAGAAATGGATTTTATTACCTCGGT 1155994 Query 46889 AGAGGTGATGAAGTTCGATGCGCCTTTTGCAAGGTTGAGATCATGCGTTGGGAAGAGGGT 46948 || || ||||| || |||||||| || ||||| || || ||| | |||| ||||| Sbjct 1155993 CACGGCGACGAAGTGCGTTGCGCCTTCTGTAAGGTGGAAATAATGAGATGGGTCGAGGGA 1155934 Query 46949 GATGATCCTGCCGAAGACCATAAACGTTGGGCTCCTCAGTGTCCGTT 46995 ||||| || || | || |||| || ||||| || |||||||| || Sbjct 1155933 GATGACCCAGCTCAGGATCATAGTCGCTGGGCGCCGCAGTGTCCCTT 1155887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314701414784084