Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq326 219 4e-52 seq53 132 4e-26 seq429 111 1e-19 seq578 105 6e-18 >seq326 Length=503882 Score = 219 bits (242), Expect = 4e-52 Identities = 796/1220 (65%), Gaps = 42/1220 (3%) Strand=Plus/Minus Query 53362 CCTAAACCCTTGTGTATCGCATTCAAAAGATCTCCGTTGTCCGCGTCGATTTCCCACGCA 53421 |||| | || ||| || || ||||| | || ||||| || ||||| ||||||||||| Sbjct 281649 CCTAGAGCCATGTTCATTGCGTTCAATATGTCACCGTTATCTGCGTCTATTTCCCACGCG 281590 Query 53422 AACAATCCACCGAGATCGTTTTCAATCACATACTGGCCCTTGTCTAGCACGGAA-TCGAT 53480 ||||| ||||| || | || | | || || | || || || ||||| ||| Sbjct 281589 AACAAACCACCTAGGTAATTCTTTCTTACGTATTTACCTTTCTCGGTAACGGATCTCGC- 281531 Query 53481 GCTGTCGTAACTGATTAAATCGCCAG-AGTTTTTATTGAATACAAACGCTGCTTTGGCTG 53539 | ||||||| | | | || || | || | | ||||| ||| | || |||| ||| Sbjct 281530 GTTGTCGTATGTAACAAGTTCCCCTGTAGATGGT-TTGAACACATAAGCAGCTTGGGCAA 281472 Query 53540 TAGTGTCGTAAGTGTAA-TCGTATTGAT---GGCCAATTTTTTCGTCAATTTTTCGGTAA 53595 | ||||| ||| || || ||| | | |||| | |||||| | |||| Sbjct 281471 CGTTATCGTA-GTGGAACTCCCATTTGTTTTGAGCAATGCCATTTGCAATTTCCCTGTAA 281413 Query 53596 TCAACGACTCCGTCTTCCCATGTGCCTGTAACAGGGCCAGTTGCCACACCGGTGAACGGA 53655 || || || || || | ||||||||| | ||| || ||||| | || ||||| ||| Sbjct 281412 TCGACCACACCATCCTGCCATGTGCCCTTGCAAGGTCCTGTTGCGATCCCCGTGAAAGGA 281353 Query 53656 TTGTCATCGCGGTAGCCGCTCACTCCAGTCCAACCGCGCCCGTACATCGCCACTCCGAGA 53715 || |||| || | ||||| ||||| || || || ||||| || || || | Sbjct 281352 TTACCATCTGTATAATTGTGTACTCCGGTCCACCCACGTCCATACATTGCAACACCTACG 281293 Query 53716 ACAATTTT-TTCCTGTTGA-ACTTTTTGTTCGAGCAACGCGCGCACGGCAACATCGG--- 53770 |||||||| ||| ||| | || || |||| | | | || | |||| || Sbjct 281292 ACAATTTTCTTCGGGTTTACACCTT------GAGCCAATAG-GTACTG-AACACCGAAGT 281241 Query 53771 CCGTGTAAT--GCTCGCTGGGAGA-CCAAACCGGCGCGTAAATCGCCGTTTGATGTCCCA 53827 | ||| || | | || ||| ||| | || || || | || |||||||| || | Sbjct 281240 CTGTGGTATAAGTTTCCTTTGAGTTCCACTCGGGAGCATACAGTGCGGTTTGATGACCTA 281181 Query 53828 A---ATCGGTGTTTGACCAAGCGCCTTTAAAATCATACGACATTaaaaaaaTTCTGTCCA 53884 | ||| || |||||||| || ||||| || || ||| | |||||| ||||| Sbjct 281180 ATGTATCATTG---GACCAAGCACCCTTAAAGTCGTAGCTCATAACAAAAATATGGTCCA 281124 Query 53885 GGTATTGTTGGGCGTCGCGATAGTTGACGACCGCAATTTTATCATTGCCTGCACTGATTG 53944 ||| | || || | |||| || || ||||| || || ||||| || | Sbjct 281123 TGTAATTCTGCGCAGCTTTGTAGTCTACAACTTGGATTTTGTCCCATCCAGCACTAATAG 281064 Query 53945 CGCTAGTCAACTCGAACTT-TCGTCCAGTTTCCAATTCCA--ATTGATCCAACATTTGTC 54001 | || || ||| |||| | | ||| |||| ||| | ||| | | ||||| || Sbjct 281063 CTGATGTTAATTCGTACTTCTTGCCCA-TTTC--ATTGGATAATTCGTTAAGCATTTCTC 281007 Query 54002 GCAACTCTTTTAACAACACCACATACGTTAAACTATCTTTTTGAGGATCGCCCACGGACG 54061 | | ||| || | || | ||||| | || ||| || |||| | || | | || Sbjct 281006 GAAGCTCCTTCATTAATAAAACATAGACTTCACCATCCTT---AGGACCACCAAGTGTCG 280950 Query 54062 GATTGGCACCGTTTCCGCCAGGAAACTCCCAATCGACGTCGACACCATCAAAAAATTTCC 54121 | || || || || || ||||| || ||||| || | ||| |||||||| |||||||||| Sbjct 280949 GGTTTGCGCCCTTACCTCCAGGGAATTCCCAGTCTATGTCTACACCATCGAAAAATTTCC 280890 Query 54122 ACGTCAATAGGAATTCGCGCACGGAATCCAC-AAACACTTTGCGTTTGGAAGAATCGTGG 54180 | || ||||| || || || || | |||| | | ||| || | | Sbjct 280889 AGGTTTGAAGGAAGTCTTTTACAGAGTCAATGAAACGCGCTCTCTTTACCTTG-TCATCG 280831 Query 54181 AAATGGTAAAACGGATCCGATAACGTCCAACCGCCGATTGACGGTAATACTTTGACGTTG 54240 || | | || ||||| | | ||||||||||| || || || | | || | | Sbjct 280830 AAGAAGAAGAATGGATCAGCGAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGATCA 280771 Query 54241 GGATTCGCTTTTTTCACGGCCATAATCTGTCCAAAATTGCCTTTATACGGTTCGTTCCAG 54300 || | |||| ||| | | ||| | ||| ||||| |||||||| || ||||| |||||| Sbjct 280770 GGTCTTGCTTGTTTTAAAGACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTCCAG 280711 Query 54301 GCGGAGACGCCTTTTTGCGGTTTTTGCACCGCCGCCCAAGGATCATGGATGGCTACTTTA 54360 | || | |||||||| |||||||| | || ||||| || || || |||| ||||||| Sbjct 280710 GAAGAAAGTCCTTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACTTTA 280651 Query 54361 AAATCCGACCGGCCAGCGCAAGATCTTTGTAGAGCTTCAAAACTGCCCGGTATAGTTTTT 54420 || || |||||| ||||||||| |||| |||| ||||| ||| || ||| Sbjct 280650 AAGTCTTCTCGGCCACTGCAAGATCTCTGTAACGCTTGGAAACTTCCCTCAATTTCTTTC 280591 Query 54421 AAACTGTCATTTATTCCGTCGCCGCCGCAAATTGGCACAAAACCGTACAAAAGATGCGTC 54480 |||||||| || ||||| || || || ||||| || | |||||||||||||||||| || Sbjct 280590 AAACTGTCGTTGATTCCATCACCACCACAAATCGGGATAAAACCGTACAAAAGATGAGTT 280531 Query 54481 AAATTAGGCACGGGCACTTTGTCCATTGGAAAATTTCGTCCGTACACTCCCCATTCTACA 54540 ||||| || | || | ||||| ||| | |||| || ||||||||||| ||| Sbjct 280530 AAATTCGGGATTGGTATACGGTCCACGGGATACTTTCTAGGATAAACTCCCCATTCAACA 280471 Query 54541 AAATAGGCGGCCACAACTTT 54560 || || || | ||||| || Sbjct 280470 AAGTAAGCACCAACAACCTT 280451 >seq53 Length=2198565 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| ||||| || || | || || | || || ||||| || Sbjct 1830986 ATGCAAATTTTTGTTAAAACACTGACAGGAAAAACCATCACATTGGAGGTTGAACCTTCA 1831045 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||||| |||||||| ||||| || ||||| || || Sbjct 1831046 GACACCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCAG 1831105 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166 || ||| | || | ||| || || ||||||||||| | ||| || | || || ||||| Sbjct 1831106 CAACGTCTTATCTTCGCTGGAAAGCAATTGGAAGA-TGGCCGAACGCTGTCAGACTACAA 1831164 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 |||||||||||| || ||||| ||| | || | ||| || | ||||||| Sbjct 1831165 CATTCAAAAGGAATCAACCTTGCATCTTGTACTCCGTCTGAGAGGTGGCA 1831214 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || ||||| | || || || ||||||||| | || Sbjct 1830758 ATGCAAATTTTCGTTAAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTCT 1830817 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| |||||||||||||| ||||| || ||||| || || Sbjct 1830818 GACACCATTGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAG 1830877 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || || |||||||| | ||| |||| || |||||| Sbjct 1830878 CAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAAC 1830937 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | ||| | || || ||| | |||| || || Sbjct 1830938 ATTCAAAAGGAATCAACACTTCATCTTGTGTTACGTCTCAGGGGAGGAAT 1830987 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||||||||| || || || | || || | ||||| ||||| || Sbjct 1830530 ATGCAGATCTTCGTAAAAACTCTTACGGGAAAAACCATCACATTAGAAGTTGAACCTTCA 1830589 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||||| || ||||| ||||| || ||||| || || Sbjct 1830590 GACACCATTGAAAATGTTAAAGCTAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 1830649 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || || |||||||| | ||| |||| || |||||| Sbjct 1830650 CAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAAC 1830709 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 |||||||||||||| || | ||| | || || ||| Sbjct 1830710 ATTCAAAAGGAGTCAACACTTCATCTTGTGTTACGT 1830745 >seq429 Length=186180 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| || || || ||| | || || || || ||||| | || Sbjct 15485 CATGCAGATCTTTGTGAAAACCCTCACGGGTAAGACCATCACCCTAGAGGTGGAGGCCTC 15544 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | || || || || || || || || || || ||||| || || Sbjct 15545 CGACACTATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCTGACCA 15604 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | ||| || |||||| | ||||| | ||| | ||||| || || Sbjct 15605 ACAGCGTTTGATTTTCGCTGGTAAACAACTTGAAGATGGGCGTACCCTGTCCGACTATAA 15664 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||| || ||||| || || |||| ||||| ||| Sbjct 15665 CATCCAGAAGGAATCTACACTACACTTGGTGTTG 15698 >seq578 Length=1472074 Score = 105 bits (116), Expect = 6e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||||||||| || || ||| | ||||||||||| || ||||| || Sbjct 656041 ATGCAGATCTTCGTAAAAACTCTCACGGGGAAGACCATTACTCTTGAGGTTGAACCCTCG 656100 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| |||||||||||||||||||| || || || |||||| Sbjct 656101 GATACCATCGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAA 656160 Query 27108 CAG 27110 ||| Sbjct 656161 CAG 656163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434878452744960