Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq1173 96.9 3e-15 >seq1173 Length=128733 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 126129 ACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTG 126188 |||||||||||| | | || | | |||||||| || |||||||| |||||||| Sbjct 62598 ACCTCAAGTCCAGTTATGTGAGCTATCATATGTGTCAATATGGCATAACTGGCAATATTA 62657 Query 126189 AAAGGAACACCTAAAAATATATCAGCACTTCTTTGATATAATTGACAATTTAATTTACCC 126248 ||||| ||||| | |||||||||||||||||||| ||| |||| | |||| | Sbjct 62658 AAAGGTACACCAAGTCCCATATCAGCACTTCTTTGATACAATAGACAGGAGAGTTTATCA 62717 Query 126249 TCTTGTACGTAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCCATTGAATCGATTTCA 126308 | ||| | ||| ||| | ||||||||||||||||||||| ||| | ||| Sbjct 62718 TTAGCTACATGAAACTGAGCAAGACAATGGCAAGGTGGTAATGCCATTTTATCAAGATCA 62777 Query 126309 GTAGGATTCCA 126319 | || ||||| Sbjct 62778 GATGGGTTCCA 62788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408561808481036