Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq53 82.4 5e-11 >seq53 Length=2198565 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/224 (69%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA-- 27843 ||||||||| || || || ||||||||||| || ||| || ||| | || || ||| Sbjct 1830526 TAAAATGCAGATCTTCGTAAAAACTCTTACGGGAAAAACCATCACATTAGAAGTTGAACC 1830585 Query 27844 AGCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 || || || | ||| || ||| ||||| ||||| |||||| |||| Sbjct 1830586 TTCAGACACCATTGAAAAT--GTTAAAGCTAAAATCCAGGACAAGGAAGGTATTCCACCA 1830643 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| | || ||||| ||||| || ||||| || | |||| | | || || Sbjct 1830644 GACCAGCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGAC 1830703 Query 27964 TACAACATCCAAAAAGAG--AGCACTTTGCATTTGGTTTTGCGT 28005 |||||||| ||||| ||| | ||||| ||| | || || ||| Sbjct 1830704 TACAACATTCAAAAGGAGTCAACACTT--CATCTTGTGTTACGT 1830745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355830531187596