Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq53 181 2e-40 seq429 159 8e-34 seq578 109 1e-18 >seq53 Length=2198565 Score = 181 bits (200), Expect = 2e-40 Identities = 168/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| ||||| || ||||| ||||| ||||| || || | |||||| | ||||||||| Sbjct 1830738 ACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCC 1830679 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | |||||| || || ||||| || ||||| ||||| || |||| ||||||||||||||| Sbjct 1830678 AACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGG 1830619 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || ||| || ||||| |||||||| || |||||| || | ||||| || ||| Sbjct 1830618 ATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATGGTTTTT 1830559 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 ||||| ||||| ||||| || | |||||||||| Sbjct 1830558 CCCGTAAGAGTTTTTACGAAGATCTGCATTTTA 1830526 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| ||||| || || || ||||| ||||| || || | |||||| | ||||||||| Sbjct 1830966 ACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCC 1830907 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | |||||| || || ||||| || ||||| ||||| || |||| ||||||||||| || Sbjct 1830906 AACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGA 1830847 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || ||| || ||||| |||||||||||| ||| || || || ||||| || || Sbjct 1830846 ATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGATGGTTTTG 1830787 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || || || || | |||||| Sbjct 1830786 CCTGTGAGTGTTTTAACGAAAATTTGCATT 1830757 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || | || || || ||||| ||||| || || | || || | |||||| Sbjct 1831197 AGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGACAGCGTTCGGCCATCT 1831138 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || ||||||||||| ||||| |||||||| |||| ||||||||||| Sbjct 1831137 TCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCT 1831078 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || ||||| |||||||| || ||||||||| | ||||| || Sbjct 1831077 TGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACCTCCAATGTGATGGTT 1831018 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || || ||||| | |||||| Sbjct 1831017 TTTCCTGTCAGTGTTTTAACAAAAATTTGCATT 1830985 >seq429 Length=186180 Score = 159 bits (176), Expect = 8e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| || | || | ||| || || || || || ||||||||||| || | || Sbjct 15710 TCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGACAG 15651 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | |||||||| || || || || ||||| || | || ||||||||||| || | Sbjct 15650 GGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGGAT 15591 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||| ||||||||||| ||||| |||||||| ||||| ||| || ||||| Sbjct 15590 TCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACCTC 15531 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| |||||||| || || ||||| | |||||| || Sbjct 15530 TAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCATGTT 15483 >seq578 Length=1472074 Score = 109 bits (120), Expect = 1e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 ||||| || ||||| | |||||| ||||| || || || ||| || ||||||||||| Sbjct 656162 TGTTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCGATGGTA 656103 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 || ||| ||||||||| ||||| || ||||| ||||||||||| ||||| || | |||| Sbjct 656102 TCCGAGGGTTCAACCTCAAGAGTAATGGTCTTCCCCGTGAGAGTTTTTACGAAGATCTGC 656043 Query 211113 ATTTT 211117 || || Sbjct 656042 ATCTT 656038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159042870186020