Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq53 136 3e-27 seq429 104 2e-17 seq578 91.5 1e-13 >seq53 Length=2198565 Score = 136 bits (150), Expect = 3e-27 Identities = 172/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 ||||||||||||| ||||| ||||| || ||||||||||| ||||| | |||||||| Sbjct 1830525 TTAAAATGCAGATCTTCGTAAAAACTCTTACGGGAAAAACCATCACATTAGAAGTTGAAC 1830584 Query 23666 CCACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 | | ||||| ||| |||| ||||| | ||||| ||||| |||||| | || ||| Sbjct 1830585 CTTCAGACACCATTGAAAATGTTAAAGC-TAAAATCCAGGACAAGGAAGGTATTCCACCA 1830643 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 || || || ||| | || ||||| || || || ||||||| | ||||| | || Sbjct 1830644 GACCAGCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGAC 1830703 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||||||| ||||| ||||| ||| | ||| | || ||| | | |||||||| Sbjct 1830704 TACAACATTCAAAAGGAGTCAACACTTCATCTTGTGTTACGTCTCAGAGGAGGA 1830757 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||||||||| ||||| || ||||| ||||| || ||||| || || | Sbjct 1830757 AATGCAAATTTTCGTTAAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTC 1830816 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | ||| |||||| ||||| |||||| | || ||||| || Sbjct 1830817 TGACACCATTGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCA 1830876 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || ||||| || || || ||||||| | ||||| | || ||||| Sbjct 1830877 GCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAA 1830936 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 ||| ||||| || || ||| | ||| | || ||| Sbjct 1830937 CATTCAAAAGGAATCAACACTTCATCTTGTGTTA 1830970 >seq429 Length=186180 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || |||||||||||||| || || ||||| || || || || || Sbjct 15483 AACATGCAGATCTTTGTGAAAACCCTCACGGGTAAGACCATCACCCTAGAGGTGGAGGCC 15542 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| | |||| | || || || || || || || | || || || Sbjct 15543 TCCGACACTATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCTGAC 15602 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||||||||| || || || || |||||||| ||||| | || || | ||| || Sbjct 15603 CAACAGCGTTTGATTTTCGCTGGTAAACAACTTGAAGATGGGCGTACCCTGTCCGACTAT 15662 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || || || || ||| |||| || || || ||| | || ||||| Sbjct 15663 AACATCCAGAAGGAATCTACACTACACTTGGTGTTGAGGCTTCGTGGAGG 15712 >seq578 Length=1472074 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| ||||| |||||||| || || || ||||| || ||||| || Sbjct 656038 AAGATGCAGATCTTCGTAAAAACTCTCACGGGGAAGACCATTACTCTTGAGGTTGAACCC 656097 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | |||| | ||||| | |||| || ||||||||||| | || ||||| Sbjct 656098 TCGGATACCATCGAAAATGTTAAAGCTAAAA-TTCAAGACAAAGAAGGAATCCCTCCAGA 656156 Query 23727 TCAACAG 23733 ||||||| Sbjct 656157 TCAACAG 656163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337979329972784