Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq53 158 3e-33 seq4066 102 2e-16 >seq53 Length=2198565 Score = 158 bits (174), Expect = 3e-33 Identities = 165/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 ||||| || || || || || ||||| | ||||| || | | || | |||||||| Sbjct 1830738 ACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCC 1830679 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 | |||||| ||||| ||||| || ||||| ||||| || ||||||||||||||||| ||| Sbjct 1830678 AACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGG 1830619 Query 225625 ATCTTTTGCTTCA-CAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683 || ||| |||| | || ||| ||||||||||| | ||| || ||||| ||||| || || Sbjct 1830618 AT-TTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATGGTTTT 1830560 Query 225684 GCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717 ||||| | |||||||| ||| | ||||||||| Sbjct 1830559 TCCCGTAAGAGTTTTTACGAAGATCTGCATTTTA 1830526 Score = 158 bits (174), Expect = 3e-33 Identities = 165/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || | || ||||| ||||| | ||||| || | || |||| |||||| Sbjct 1831197 AGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGACAGCGTTCGGCCATCT 1831138 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| |||||||||||||| ||||| ||||| || |||||||||||||||||| Sbjct 1831137 TCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCT 1831078 Query 225622 TGGATCTTTTGCTTCA-CAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| |||| | || ||| ||||||||||| | ||| || || || ||||| || Sbjct 1831077 TGGAT-TTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACCTCCAATGTGATGGT 1831019 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || |||| ||||| | || | ||||||| Sbjct 1831018 TTTTCCTGTCAGTGTTTTAACAAAAATTTGCATT 1830985 Score = 152 bits (168), Expect = 1e-31 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 ||||| || || || ||||| ||||| | ||||| || | | || | |||||||| Sbjct 1830966 ACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCC 1830907 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 | |||||| ||||| ||||| || ||||| ||||| || |||||||||||||||||||| Sbjct 1830906 AACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGA 1830847 Query 225625 ATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683 || ||| || || ||| ||| |||||||| |||| |||||| |||| ||||| || || Sbjct 1830846 AT-TTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGATGGTTTT 1830788 Query 225684 GCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || | ||||| | ||| | ||||||| Sbjct 1830787 GCCTGTGAGTGTTTTAACGAAAATTTGCATT 1830757 >seq4066 Length=612 Score = 102 bits (112), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || |||||||||||||| ||||||||||||||||| || || || ||||| |||| Sbjct 49 TTCTGGGTGACCAAAAAATCAAAATAAATGTTGATAAAGAATTGGGTCACCTCCTCCTGC 108 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 ||| |||||||| ||||| ||||||| || ||||||| Sbjct 109 TGGGTCAAAAAATGAGGTATTTAAATTTCGGTCTGTTAAAA 149 Score = 84.2 bits (92), Expect = 5e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||| || || | ||||||| | | || ||||||| || ||||||||||| Sbjct 300 AAAGGTATTTGATCAAAAGATAAATTATTAATTCGTATATTAATAATTGTAGTAATAAAA 359 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || || || |||| || ||||| || || || | |||||| || |||||||| || Sbjct 360 TTAATTGCCCCTAAAATTGAAGAAATTCCAGCTAAATGTAATGAGAAAATTGCTAAGTCA 419 Query 371485 ACGGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGTT 371544 |||||| || |||||| | | ||||| | || ||||| |||||||| || ||| Sbjct 420 ACGGAAGATCCTCCGTGAGCAATATTAGAAGAAAGTGGTGGGTATACTGTTCATCCTGTT 479 Query 371545 C 371545 | Sbjct 480 C 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192418927659512