Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq326 181 9e-41 seq53 87.8 1e-12 >seq326 Length=503882 Score = 181 bits (200), Expect = 9e-41 Identities = 334/490 (68%), Gaps = 0/490 (0%) Strand=Plus/Plus Query 109141 GCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTTG 109200 || |||||||| |||||||| || || | || | |||||||||| | || | Sbjct 280463 GCTTACTTTGTTGAATGGGGAGTTTATCCTAGAAAGTATCCCGTGGACCGTATACCAATC 280522 Query 109201 CCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAAC 109260 || |||||| | ||| | ||||||||||||| || || ||||| || || || |||||| Sbjct 280523 CCGAATTTAACTCATCTTTTGTACGGTTTTATCCCGATTTGTGGTGGTGATGGAATCAAC 280582 Query 109261 GACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCGC 109320 ||| | ||| ||| || ||||| | || || || |||| ||| | || || Sbjct 280583 GACAGTTTGAAAGAAATTGAGGGAAGTTTCCAAGCGTTACAGAGATCTTGCAGTGGCCGA 280642 Query 109321 GACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGGC 109380 || || || ||||| ||||| |||||| ||||| || | |||||||| |||||||| Sbjct 280643 GAAGACTTTAAAGTATCCATTCACGACCCCTGGGCTGCCTTACAAAAACCACAAAAAGGA 280702 Query 109381 GTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATTG 109440 | | | ||||| || || ||||||||||||||||| || |||||| | ||| Sbjct 280703 CTTTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGCCAGTTGATGTCTTTAAAACAA 280762 Query 109441 GCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGACCCGTTT 109500 |||| ||| | | || ||||| || || || ||||| ||||| | | || || || Sbjct 280763 GCAAGACCTGATCTAAAGATTCTTCCTTCTATTGGCGGTTGGACCCTCGCTGATCCATTC 280822 Query 109501 TATTTTATGCACGATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATTTTTA 109560 | || | | || || || ||||| ||| |||| || || || || | Sbjct 280823 TTCTTCTTCGATGACAAGGTAAAGAGAGCGCGTTTCATTGACTCTGTAAAAGACTTCCTT 280882 Query 109561 CAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAGGGT 109620 ||| |||||||| || || || || ||||| || ||||| || || || || ||||| Sbjct 280883 CAAACCTGGAAATTTTTCGATGGTGTAGACATAGACTGGGAATTCCCTGGAGGTAAGGGC 280942 Query 109621 GCCAATCCGA 109630 || || |||| Sbjct 280943 GCAAACCCGA 280952 >seq53 Length=2198565 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 101008 ATTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATC 101067 |||||| |||| || | | || | ||||| |||||||| |||||||| ||||| || Sbjct 1831216 ATTGCCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTC 1831157 Query 101068 GGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTAC 101127 | || ||| | |||||||||||| || || || | ||||| | ||| ||||| Sbjct 1831156 TGACAGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGG 1831097 Query 101128 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGT 101187 || | ||||| ||||| ||||| ||| |||| | | || || || | || Sbjct 1831096 TGGAATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTGTC--TGAAGGT 1831039 Query 101188 T--GTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 | || | || || ||||| || |||| |||||||| ||||||||||||| Sbjct 1831038 TCAACCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCATT 1830985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409624113339132