Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq183 122 7e-23 >seq183 Length=738700 Score = 122 bits (134), Expect = 7e-23 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877 || || || || || |||||| ||||||||| ||||||| |||||| || ||||||||| Sbjct 171073 ATGTATGTATCAATGAGTAGGGAATACATTTCTGAATGTACATTTTCCATTGCAATCTGA 171014 Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAG 4937 || || || || ||||| |||||||||||||| || || | | || ||||| || | Sbjct 171013 AAGCCATAGAAACATCTGGCTTCTGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGA 170954 Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 ||||| || ||||| || || || ||||| || ||||| ||||| Sbjct 170953 TTTTCATTGACTATGCCATCTGATGCAGCAAAGAAAGCCAATACATG 170907 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 4561 AATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAAC 4620 ||| ||||||| | || || ||||| ||| || || |||| || ||||||| | Sbjct 171519 AATACAAACCT-CATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTC 171461 Query 4621 CTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGG 4680 |||||||||| ||||||||||| | ||||| ||||| ||||| || || || || | Sbjct 171460 CTCTCTTTTTCAGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAG 171401 Query 4681 CGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAAT 4739 ||||||| ||||| | || || || | ||| | |||| | ||||| | | Sbjct 171400 CGGCAAATGCTACAATTCTTTCACCAAATGTAGC-AGATTTGCTTGCTATCCACTGGAGA 171342 Query 4740 GCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792 ||||| | || || ||||| || || |||| || | || ||| || ||||| Sbjct 171341 GCCCAATCTGCCTTCTTCTTTACACATGGAAGAGTCTCTACAGCATTGAATAA 171289 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 5042 TAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAAT 5101 ||| || ||||||||||||||||| || || ||||| || ||||| ||||| |||||| Sbjct 170680 TAAGTCCACTTCTTCAACAGTCCAGAAAGAAGCTTCTGCCTTTTTATACATTTGCCAAAT 170621 Query 5102 ATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||| || || ||||| |||| || ||||| Sbjct 170620 ATCCGGGTATTGAATAGGAAACATAACAAA 170591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427011356106884