Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq401 580 2e-160 seq183 118 1e-21 seq1092 102 1e-16 >seq401 Length=384550 Score = 580 bits (642), Expect = 2e-160 Identities = 1198/1774 (68%), Gaps = 34/1774 (2%) Strand=Plus/Plus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 ||||| ||||| | | | || |||||||| || | ||| ||||| |||||||| || Sbjct 356786 GTAAATTGAATGGCATTGGCAGCTGGTTTTGTGCGCAAATAATACATTCCAGTTTTAAGC 356845 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 |||| ||||| | | ||||| || ||||| ||| |||| | || || || | | Sbjct 356846 CCCATTTTCCATGCATGAAAATGAATAGATGTCAATTTTCCATAATTTGGTTCAGCAACA 356905 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 |||||||| | ||||| |||||||| || || || || |||||||| ||||||| || Sbjct 356906 TGAATATTAAAAGACTGGCTTTGATCAATAAATGCGCCCCTATCAGCTGCCATTTGGATC 356965 Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG 77021 | || || | ||||||||| | |||||| | | | | || || | ||||| Sbjct 356966 GTCGTTTTAACTGAAATTTCCCAGACTGTTTTGTATAAGTCTCGTATTTCTTTTGGAATT 357025 Query 77022 TTTG---TATTTTGAATGGAACCACCATCTGATATAATTG-TA---TTCTTTATATCATC 77074 || |||||||||| |||||| || ||| | || || || || || || || Sbjct 357026 CTTTCGATATTTTGAATTGAACCAT----TGTTATGAATGATAAGGTTTTTCATGTCTTC 357081 Query 77075 ATTCCACA-ATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATT 77133 || ||| | || | || | |||||| || | | |||||| | || |||| |||||||| Sbjct 357082 ATCCCATAGATCTGCTTGC-GTTAAATCTTTCAAAAGATGATGGTTCACTACTTGAAATT 357140 Query 77134 CTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGT 77193 |||| ||||| ||||| | || || || ||| | ||||| | |||||||| | Sbjct 357141 CTCCTGACAAAACTCTTCTCTGATATATGTTTGATGTAAAAGGTTCAAAGGATTCATTAT 357200 Query 77194 TTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGA 77253 |||| | |||||| || || || || || |||||||| || | | ||| || | | Sbjct 357201 TTCCAAGAATTTGTGCTGTGGATGCGGTAGGCATAGGCGCTAAAAGCAAAGAGTTACGAA 357260 Query 77254 GACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAA 77313 | || ||| | ||||| ||||||||| ||||| |||||| || | ||||| Sbjct 357261 GCCCGTGTTTAGAAATTTTCTCTTTTAGAGCAACCCAATTCCAAAGGTCCGTAGGTATTT 357320 Query 77314 CATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTAT---ATGTTT 77370 || ||| | ||| ||||| | ||| || ||||| || | | ||| | | || Sbjct 357321 TATTCCACATATCATATTGCAAAATACCATTACTGACA---GGGCTATTTTTAAAGGTAC 357377 Query 77371 CATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTG 77430 || |||||| |||| |||| |||||| || ||||| || ||||| |||||||| | Sbjct 357378 TGTATACACCTTCTTTTTCTGCTAATTCACAGCTTGCTTCTAAGGCTCCATAATAAATAG 357437 Query 77431 TTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAA 77490 | || || || | | ||| | | ||| | ||| ||| | |||||| | | | Sbjct 357438 TCTCAAATATTTGTTGATTTAATTTAATTGCATTTTCACTTTCATATGGATAACGCATTA 357497 Query 77491 GAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGG 77550 || || | ||| || || || ||||| ||||| ||||| ||||| |||||| | || | Sbjct 357498 AAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTGTGTCTCATGTTTG 357557 Query 77551 AAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAA 77610 || ||||||||||||||| ||||| ||||| | || |||||||| || | |||| Sbjct 357558 AATTTTTAGCTTCTGGAACTGGATAGTAATTCACATCAATAATTTTGTTTAAATTTTGGG 357617 Query 77611 CAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATC--AAATCTTC-CATCTATAACAA 77667 || | |||| || ||||||| || ||||| || | || | || | |||| Sbjct 357618 TAATTGTTTTAGTGACTTCCTTTAACTTTTCAAAATTGTAAGTTTTGTCTTCATTGACAA 357677 Query 77668 ACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATT 77727 ||||||| | |||||| ||||||| |||||| || || || |||| | || |||| Sbjct 357678 ACATGTTGAGAGCTATTGATGCTAAATTACAGACAGCCACTTCATCTTCCGAGGTGTATT 357737 Query 77728 GTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCT 77787 || || || || || ||||| |||||||| || ||||| || |||||||| ||||| | Sbjct 357738 CTACAATTTCTGTGCAGAGATTGCTACATTTAATTGTGCCAAGGTTTTGTTGATTGCTTT 357797 Query 77788 TTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGA 77847 || | || |||||||| ||||| || ||||| || || || || || | |||| || | Sbjct 357798 TTCTGTTACATGAGTCTTTATACAGCATAAATGGTGTTCCAGTCTCTACTTGTGCCTCAA 357857 Query 77848 TAATAGATTTCCAGACGA------CTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTC 77901 | |||| |||||| | | | | | ||| | | | | | || | ||||| Sbjct 357858 TTATAGCTTTCCATAAAATTTGTGCACGAACTTGTTTAACATACTT------CTTCTCTT 357911 Query 77902 TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGC 77961 ||||||||| ||| | | |||||||| |||||||| ||| | | ||||| Sbjct 357912 GTTCATATTGTTCATACAACTTCTCAAATTCTTCTCCCCAGCAGTCAGCGAGGCCAGGAG 357971 Query 77962 ATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGAT 78021 | | | || ||||| | ||| | | | | | |||| ||||| || | || Sbjct 357972 AATTGTGAGGACACATGAGACTCCAATTTTCGTTCTTTTCTACTCTCTTCATGAATAAAT 358031 Query 78022 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCT 78081 |||| ||||| |||||| || || |||| || | |||||| || |||||||||| Sbjct 358032 CAGGAATCCAAAGAGCATAGAAAAGCTCTCTGGCACGCACTTCTTCTTTCCCTGTATTCT 358091 Query 78082 TTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAA 78141 |||| || || | ||| || | |||||||| |||||||||||||| ||| || || | Sbjct 358092 TTTTTAGGTCTAAAAATTCAAAAATATCAGCATGCCATGGTTCTAAATAAATAGCAAATG 358151 Query 78142 CTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCA 78201 | || |||| |||||| || || ||||| | |||||| || || || || || || || | Sbjct 358152 CACCTGGTCTTTTATTTCCGCCTTGATCGACATATCTTGCAGTATTGTTGTACACCCTTA 358211 Query 78202 ACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGC 78261 |||| || | | || || || |||||||||||| | |||||| |||| | || | Sbjct 358212 ACATAGGGACTAAGCCATTTGAAACTCCATTTGTTCCGGCAATATATGTTCCCTTAGCTC 358271 Query 78262 GAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTT 78321 ||| | || || || ||||| ||||| ||| ||||||| || | | Sbjct 358272 TTATACAATGAACATGTAGACCAATTCCACCTGCAGACTTTGATATTAATGCTGCTTGCT 358331 Query 78322 TCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAG 78381 | | ||||| ||||||||||| ||||||||||| |||| || | |||||| || Sbjct 358332 TTAGGGTATCATAGATACCCTCAATACTGTCATCTCTCATAGCAATTAAAAAACAAGAAG 358391 Query 78382 ACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATT 78441 ||| ||| | | ||| |||| || | || ||| ||||| ||||| ||| Sbjct 358392 ACAGCTGAGGTCTAGGTGTTGCTGCTGAGAAAAGAGTTGGACTGGCATGAGTAAAGTATT 358451 Query 78442 TTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTA 78501 ||||||| | | ||||||||| | || || | |||||||| | ||| || || | Sbjct 358452 TTTCAGATAACAAATTGTATGTCTTGATGGCAGCATCTATGTCATCTCCATGTATACCAA 358511 Query 78502 CCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || || | ||| |||||||| || || || || Sbjct 358512 TTGCCACTCTCATTAACATATGTTGTGGCCTCTC 358545 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 78542 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 |||||| || || || | | ||||||| ||||||||||||||||||||||||||||||| Sbjct 358658 CTTATTGTTAATCTTGAGAAGGTATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 358717 Query 78602 TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTT 78646 | |||||| || || || | ||| | |||| || | | ||||| Sbjct 358718 TTTAAAGTCCCTGTCATATACAATTGCTGAATCTAATCTGTCTTT 358762 >seq183 Length=738700 Score = 118 bits (130), Expect = 1e-21 Identities = 147/200 (74%), Gaps = 5/200 (3%) Strand=Plus/Minus Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || || || ||||||||||| | ||||| ||||||||||||| || ||| |||| Sbjct 171482 AAGGTTAGGCCAGGCATTAGTCCTCTCTTTTTCAGCCAAAATATTGAAGCAAAACTTCCA 171423 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC----GTAACTGGC 48307 || ||||| || || || || || |||||||| || ||| || || ||| | | Sbjct 171422 GAGAAGAAAATTCCCTCAACAGCGGCAAATGCTACAATTCTTTCACCAAATGTAGCAGAT 171363 Query 48308 TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC 48367 || ||| ||||||| | | |||||||| ||||||||||||||||| || | || || Sbjct 171362 TTGCTTG-CTATCCACTGGAGAGCCCAATCTGCCTTCTTCTTTACACATGGAAGAGTCTC 171304 Query 48368 TATAGCATTAAAGAGAAAGT 48387 || |||||| || | |||| Sbjct 171303 TACAGCATTGAATAAGAAGT 171284 >seq1092 Length=556928 Score = 102 bits (112), Expect = 1e-16 Identities = 243/366 (66%), Gaps = 5/366 (1%) Strand=Plus/Plus Query 170969 ATGATTCCTATAAATCCTATGTTAGCAGAATCATGTGATTCTGTTAACAAGGCATTTAAA 171028 |||| |||||| || ||||||||||| | ||| | || || | | ||| | ||| Sbjct 531360 ATGACTCCTATTCTGCCAATGTTAGCAGAGGCCTGTAAATCAATTGAAATGGCTATGAAA 531419 Query 171029 AAATTTCCATCTGGAATGTTTGCAGAAGTAAAATATGATGGTGAACGAGTCCAAGTTCAT 171088 || | |||| ||| |||||| | ||| |||| ||||||||||| || |||||||||||| Sbjct 531420 AAGTGTCCAAATGGTATGTTTTCTGAAATAAAGTATGATGGTGAGCGTGTCCAAGTTCAT 531479 Query 171089 AAAAACAATAATAATTTTGCCTTCTTTAGCAGAAACATGAAACCAGTTTTACCACATAAA 171148 ||||| ||| | ||| | ||| || | || ||||| | |||||||| Sbjct 531480 AAAAAAGGTAAGGAGTTTAAGTATTTTTCTCGAGCTCTAAAGCCAGTAATGTCACATAAA 531539 Query 171149 GTTGATTATCTCAAGGAATACCTTCCTAAAGCATTTAAAAAAGCTACCTCTATTATCTTG 171208 || || || | || || || | || |||||||| ||||| ||| || ||| Sbjct 531540 GTAAATCATTTTAAAGACTATTTACCACAAGCATTTCCAAAAGGGGAAGATATGATTTTG 531599 Query 171209 GATTCCGAAATTGTTCTAGTTGATG----AACATAATGTTCCACTTCCGTTTGGAAGTCT 171264 ||| | ||| | | | || |||| |||| | ||| | |||||||| | | | Sbjct 531600 GATGCAGAAGTATTAATGGTAGATGTGAAAACAGGA-AAACCATTACCGTTTGGCACTTT 531658 Query 171265 AGGAATACACAAAAAGAAAGAGTACAAAAATGCTAATATGTGTTTGTTCGTCTTTGATTG 171324 ||| |||| ||| || ||||| ||| |||| | | || || | | | ||||| || Sbjct 531659 AGGTGTACATAAACAGTCAGAGTTTAAAGATGCCCAAGTATGCTTATACATATTTGACTG 531718 Query 171325 TTTATA 171330 ||| || Sbjct 531719 TTTGTA 531724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694604994670720