Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq401 583 1e-161 seq183 123 4e-23 seq1092 93.3 6e-14 >seq401 Length=384550 Score = 583 bits (646), Expect = 1e-161 Identities = 1204/1779 (68%), Gaps = 38/1779 (2%) Strand=Plus/Plus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 || || | ||| || ||||||| | || ||||||||||| || | ||| ||||| ||| Sbjct 356777 TTGTCAACCGTAAATTGAATGGCATTGGCAGCTGGTTTTGTGCGCAAATAATACATTCCA 356836 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487 ||||| || |||| ||||| | | ||||| || ||| | ||| |||| | || Sbjct 356837 GTTTTAAGCCCCATTTTCCATGCATGAAAATGAATAGATGTCAATTTTCCATAATTTGGT 356896 Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547 || || | ||||||||| | ||||| |||||||| || || || || |||||||| ||| Sbjct 356897 TCAGCAACATGAATATTAAAAGACTGGCTTTGATCAATAAATGCGCCCCTATCAGCTGCC 356956 Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 75607 |||| || | || || | ||||||||| | |||||| | | | | || || Sbjct 356957 ATTTGGATCGTCGTTTTAACTGAAATTTCCCAGACTGTTTTGTATAAGTCTCGTATTTCT 357016 Query 75608 TCTGGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTG-TA---TTCTT 75660 | ||||| || |||||||||| || || || | ||| | || || || || Sbjct 357017 TTTGGAATTCTTTCGATATTTTGAATTGAACC---ATT-GTTATGAATGATAAGGTTTTT 357072 Query 75661 GATCTCATCATTCCACA-ATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAA 75719 || || |||| ||| | || | || || ||||| || | | |||||| | || || | Sbjct 357073 CATGTCTTCATCCCATAGATCTGCTTGCG-TTAAATCTTTCAAAAGATGATGGTTCACTA 357131 Query 75720 TTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAG 75779 |||||||||||| ||||| ||||||| || || || ||| | ||||| | | Sbjct 357132 CTTGAAATTCTCCTGACAAAACTCTTCTCTGATATATGTTTGATGTAAAAGGTTCAAAGG 357191 Query 75780 ATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAAC 75839 ||||||| ||||| | |||||| || || || || || |||||||| || | | ||| Sbjct 357192 ATTCATTATTTCCAAGAATTTGTGCTGTGGATGCGGTAGGCATAGGCGCTAAAAGCAAAG 357251 Query 75840 TATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899 || | || || ||| | ||||| ||||||||| ||||| |||||| || | Sbjct 357252 AGTTACGAAGCCCGTGTTTAGAAATTTTCTCTTTTAGAGCAACCCAATTCCAAAGGTCCG 357311 Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTAT 75959 |||| || ||| | ||| ||||| | ||| || || || || | | ||| | Sbjct 357312 TAGGTATTTTATTCCACATATCATATTGCAAAATACCATTACTGACA---GGGCTATTTT 357368 Query 75960 ---ATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGT 76016 | || ||| || || ||||| |||| ||| || || || ||||| || || | Sbjct 357369 TAAAGGTACTGTATACACCTTCTTTTTCTGCTAATTCACAGCTTGCTTCTAAGGCTCCAT 357428 Query 76017 AATAAATTGTTTCGAAAATCTTCTTATTAAGATC--TTGCGCTTCAAGACTATCAAAAGG 76074 ||||||| || || || || | | ||| | | |||| || | || ||| | || Sbjct 357429 AATAAATAGTCTCAAATATTTGTTGATTTAATTTAATTGCATTTTCA--CTTTCATATGG 357486 Query 76075 ATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134 |||| | | | || |||| ||| || | || ||||| ||||| ||||| ||||| || Sbjct 357487 ATAACGCATTAAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTGTG 357546 Query 76135 TCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATT 76194 |||| | || ||| ||| ||||||||||| || || ||||| | ||| |||||||| || Sbjct 357547 TCTCATGTTTGAATTTTTAGCTTCTGGAACTGGATAGTAATTCACATCAATAATTTTGTT 357606 Query 76195 GAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATC--AAATTTTC-C 76251 | |||| | || | |||| || ||||||| || ||||| || |||| | Sbjct 357607 TAAATTTTGGGTAATTGTTTTAGTGACTTCCTTTAACTTTTCAAAATTGTAAGTTTTGTC 357666 Query 76252 ATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGC 76311 || | |||||||| || |||||||| ||||||| |||||| || || || |||| | Sbjct 357667 TTCATTGACAAACATGTTGAGAGCTATTGATGCTAAATTACAGACAGCCACTTCATCTTC 357726 Query 76312 ATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTG 76371 || |||| || || || ||||| ||||| ||||| || || || ||||| ||||| Sbjct 357727 CGAGGTGTATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATTGTGCCAAGGTTTTG 357786 Query 76372 TTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAAT 76431 ||| ||||| ||| ||||||||||||| ||||| || | ||| || |||||||| || | Sbjct 357787 TTGATTGCTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGGTGTTCCAGTCTCTAC 357846 Query 76432 CTGTGATTCGATAATAGATTTCCAGACGA------CTCTAGCTTTTATTATAGATTTGTA 76485 |||| || || |||| |||||| | | | | | ||| | | | | | || Sbjct 357847 TTGTGCCTCAATTATAGCTTTCCATAAAATTTGTGCACGAACTTGTTTAACATACTT--- 357903 Query 76486 TCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATC 76545 ||||||| |||||||||| ||| ||| |||||||| |||||||| ||| | Sbjct 357904 ---CTTCTCTTGTTCATATTGTTCATACAACTTCTCAAATTCTTCTCCCCAGCAGTCAGC 357960 Query 76546 CAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTT 76605 | |||||| | | | |||||||| | ||| | | | | | || | || Sbjct 357961 GAGGCCAGGAGAATTGTGAGGACACATGAGACTCCAATTTTCGTTCTTTTCTACTCTCTT 358020 Query 76606 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATT 76665 ||| || | |||||| ||||| |||||| || || |||| || | |||||| || Sbjct 358021 CATGAATAAATCAGGAATCCAAAGAGCATAGAAAAGCTCTCTGGCACGCACTTCTTCTTT 358080 Query 76666 TCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATA 76725 |||||||||||||| || |||| || || | |||||||| |||||||||||||| ||| Sbjct 358081 CCCTGTATTCTTTTTTAGGTCTAAAAATTCAAAAATATCAGCATGCCATGGTTCTAAATA 358140 Query 76726 TATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATT 76785 || || | |||| |||| |||||| || || ||||| | |||||| ||||| || || Sbjct 358141 AATAGCAAATGCACCTGGTCTTTTATTTCCGCCTTGATCGACATATCTTGCAGTATTGTT 358200 Query 76786 ATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACT 76845 || || || ||||| || | | ||| || || ||||||||||| | |||||| | Sbjct 358201 GTACACCCTTAACATAGGGACTAAGCCATTTGAAACTCCATTTGTTCCGGCAATATATGT 358260 Query 76846 TCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAG 76905 ||| || | ||| | || | ||| || ||||| ||||| || || |||| Sbjct 358261 TCCCTTAGCTCTTATACAATGAACATGTAGACCAATTCCACCTGCAGACTTTGATATTAA 358320 Query 76906 AGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAG 76965 || | || | || |||||||| ||||| ||||| ||||| |||| || | Sbjct 358321 TGCTGCTTGCTTTAGGGTATCATAGATACCCTCAATACTGTCATCTCTCATAGCAATTAA 358380 Query 76966 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATG 77025 |||||| ||||| ||| | | ||| |||| || | || ||| ||||| Sbjct 358381 AAAACAAGAAGACAGCTGAGGTCTAGGTGTTGCTGCTGAGAAAAGAGTTGGACTGGCATG 358440 Query 77026 AGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTG 77085 ||| || |||||||||| | | ||||||||| | || | || ||||| || | Sbjct 358441 AGTAAAGTATTTTTCAGATAACAAATTGTATGTCTTGATGGCAGCATCTATGTCATCTCC 358500 Query 77086 ATGAATTCCTACAGCGACACGCATCAACATATGCTGAGG 77124 ||| || || | || || | ||| |||||||| || || Sbjct 358501 ATGTATACCAATTGCCACTCTCATTAACATATGTTGTGG 358539 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/121 (78%), Gaps = 3/121 (2%) Strand=Plus/Plus Query 77137 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 77196 |||||| || || || | | ||||||| ||||||||||||||||||||||||||||||| Sbjct 358658 CTTATTGTTAATCTTGAGAAGGTATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 358717 Query 77197 TGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAAT 77256 | |||||| || || || | ||| | |||| || | |||| ||| || || ||||| Sbjct 358718 TTTAAAGTCCCTGTCATATACAATTGCTGAATCTAATCTGTCTTTA---TTAGTTACAAT 358774 Query 77257 A 77257 | Sbjct 358775 A 358775 >seq183 Length=738700 Score = 123 bits (136), Expect = 4e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 46900 TATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAAT 46959 |||||||| || | || ||||||||||||||| | ||||| || || |||||||| Sbjct 171070 TATGTATCAATGAGTAGGGAATACATTTCTGAATGTACATTTTCCATTGCAATCTGAAAG 171011 Query 46960 CCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTC 47019 || || |||||||| ||||| || | ||||||||| | || | |||| || ||| Sbjct 171010 CCATAGAAACATCTGGCTTCTGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGATTT 170951 Query 47020 TCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 ||||| ||||| ||||| |||||||| || ||||||||||| ||||| || Sbjct 170950 TCATTGACTATGCCATCTGATGCAGCAAAGAAAGCCAATACATGCTTAATGAA 170898 Score = 118 bits (130), Expect = 2e-21 Identities = 147/199 (74%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || || || |||||||||||||| | |||||| ||||||||||| | || ||| |||| Sbjct 171482 AAGGTTAGGCCAGGCATTAGTCCTCTCTTTTTCAGCCAAAATATTGAAGCAAAACTTCCA 171423 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 || ||||| || || || ||||| || ||||| |||| ||| || || | | ||| Sbjct 171422 GAGAAGAAAATTCCCTCAACAGCGGCAAATGCTACAATTCTTTCACCAAATGTAGCAGAT 171363 Query 46801 TT--ATG-AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 || || |||||| |||||||||| ||||| ||||||||||| || | || ||| Sbjct 171362 TTGCTTGCTATCCACTGGAGAGCCCAATCTGCCTTCTTCTTTACACATGGAAGAGTCTCT 171303 Query 46858 ATAGCATTAAAGAGAAAGT 46876 | |||||| || | |||| Sbjct 171302 ACAGCATTGAATAAGAAGT 171284 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 || |||| || ||||||||| | |||||||| || || ||||| ||||||||||| | | Sbjct 170685 TTCGATAAGTCCACTTCTTCAACAGTCCAGAAAGAAGCTTCTGCCTTTTTATACATTTGC 170626 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAA 47210 || ||||| | ||||| || ||||| |||||||| Sbjct 170625 CAAATATCCGGGTATTGAATAGGAAACATAACAAA 170591 >seq1092 Length=556928 Score = 93.3 bits (102), Expect = 6e-14 Identities = 218/327 (67%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 169537 ATGACTCCTATCAATCCTATGTTGGCCGAATCATGCGATTCTGTTAACAAGGCATTTAAA 169596 ||||||||||| || ||||| || || | || | || || | | ||| | ||| Sbjct 531360 ATGACTCCTATTCTGCCAATGTTAGCAGAGGCCTGTAAATCAATTGAAATGGCTATGAAA 531419 Query 169597 AAATTTCCATCTGGGATGTTTGCAGAAGTCAAATATGACGGTGAACGAGTGCAAGTTCAT 169656 || | |||| ||| |||||| | ||| | || ||||| ||||| || || ||||||||| Sbjct 531420 AAGTGTCCAAATGGTATGTTTTCTGAAATAAAGTATGATGGTGAGCGTGTCCAAGTTCAT 531479 Query 169657 AAAAATAATAACAACTTTGCCTTCTTTAGTAGAAATATGAAACCAGTTTTACCACATAAA 169716 ||||| ||| | ||| | ||| | || | | || ||||| | |||||||| Sbjct 531480 AAAAAAGGTAAGGAGTTTAAGTATTTTTCTCGAGCTCTAAAGCCAGTAATGTCACATAAA 531539 Query 169717 GTTGATTATCTCAAAGAATACCTTCCTAAAGCATTTAAAAAAGCTACGTCTATTATCTTG 169776 || || || | ||||| || | || |||||||| ||||| ||| || ||| Sbjct 531540 GTAAATCATTTTAAAGACTATTTACCACAAGCATTTCCAAAAGGGGAAGATATGATTTTG 531599 Query 169777 GATTCTGAAATTGTTCTAGTTGA--CGAACACA-ATATACCACTTCCGTTTGGAAGTTTA 169833 ||| | ||| | | | || || ||| ||| | |||| | |||||||| | |||| Sbjct 531600 GATGCAGAAGTATTAATGGTAGATGTGAAAACAGGAAAACCATTACCGTTTGGCACTTTA 531659 Query 169834 GGAATACACAAAAAGAAAGAATATAAA 169860 || |||| ||| || ||| | |||| Sbjct 531660 GGTGTACATAAACAGTCAGAGTTTAAA 531686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712868916975360