Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq53 125 2e-23 seq578 89.7 1e-12 >seq53 Length=2198565 Score = 125 bits (138), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||||||||| || ||||| ||||| |||||||| || | | || | |||||||| Sbjct 1830738 ACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCC 1830679 Query 151956 A--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 | ||||| || || ||||| || | |||||||| | | || |||||||| || | Sbjct 1830678 AACTGCTTT--CCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCCT 1830621 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 | ||||| ||| ||| | || | | |||||||| || ||||| | || || |||| Sbjct 1830620 GGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATGGTTT 1830561 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 | ||||| ||||| || ||||||| |||||||||| Sbjct 1830560 TTCCCGTAAGAGTTTTTACGAAGATCTGCATTTTA 1830526 Score = 116 bits (128), Expect = 9e-21 Identities = 162/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | | ||||||||||| || || || ||||| |||||||| || | | || Sbjct 1830979 CCTGAGACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGT 1830920 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||| | ||||| || || ||||| || | |||||||| | | || Sbjct 1830919 GCGGCCATCTTCCAACTGCTTT--CCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATA 1830862 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 |||||||| ||||||||||| ||||||| | || | | |||| || || ||||| Sbjct 1830861 CCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACTTCT 1830802 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || |||||||| ||||| || || ||||| | |||||| Sbjct 1830801 AGGGTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCATT 1830757 Score = 102 bits (112), Expect = 2e-16 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| |||||||| | || || || ||||| |||||||| || | | ||| Sbjct 1831206 CTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGACAGCGTT 1831147 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | |||||||| | ||||| || ||||||||||| | |||||||| | | || | Sbjct 1831146 CGGCCATCTTCCAATTGCTTT--CCAGCGAAGATAAGACGTTGCTGGTCAGGTGGAATAC 1831089 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| ||||| ||||| ||| ||| | || | | |||||||| || || || | Sbjct 1831088 CTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACCTCCA 1831029 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || || || || || || || | |||||| Sbjct 1831028 ATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCATT 1830985 >seq578 Length=1472074 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 151979 CCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTAC 152038 |||||| || || | | ||||||||| || ||||||||||| ||| ||| | || | Sbjct 656166 CCTCTGTTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCGAT 656107 Query 152039 GCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGAC 152098 | | || || || || ||||||||||| || || ||||||||||| || ||||||| Sbjct 656106 GGTATCCGAGGGTTCAACCTCAAGAGTAATGGTCTTCCCCGTGAGAGTTTTTACGAAGAT 656047 Query 152099 CTGCATTTT 152107 |||||| || Sbjct 656046 CTGCATCTT 656038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153712172098508