Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq129 145 6e-30 seq53 86.0 5e-12 >seq129 Length=3256488 Score = 145 bits (160), Expect = 6e-30 Identities = 201/281 (72%), Gaps = 3/281 (1%) Strand=Plus/Minus Query 104964 CGTCGCGTGTG---ATGCCCGGCCCTATACACCCTAAATACGGCTCCGAGTCTGCACGTT 105020 || ||| |||| ||||| ||||| ||||| | | ||||| |||||| |||| ||| Sbjct 1155794 CGGCGCCTGTGCGTATGCCAGGCCCAGTACACTCCAGATACGCGTCCGAGGCTGCTCGTC 1155735 Query 105021 TAAAAACTTTTGAGGATTGGCCACTTAGTTTAAAACAAAGGCCAGAGCAATTGGCCGAAG 105080 | || |||| |||||||| ||| | |||| ||| || || |||| |||| Sbjct 1155734 TTCGCACCTTTGCCGATTGGCCTAGAAGTATGCGCCAAAAGCCCGAAGAACTGGCGGAAG 1155675 Query 105081 CCGGTTTTTACTACACCGGCAAAGGTGATAAAGTCAAATGTTTTTATTGCGACGGCGGCC 105140 | || |||| |||||| || | || || ||| |||||| ||||| || || || |||| Sbjct 1155674 CTGGCTTTTTCTACACGGGTCACGGCGACAAAACCAAATGCTTTTACTGTGATGGGGGCC 1155615 Query 105141 TTAAGGATTGGGCAAACGCCGACGAACCGTGGGAGGAACATGCACGTTGGTTTGATCGCT 105200 | ||||| |||| ||| | ||||| || |||||| |||| || ||||||||||| || | Sbjct 1155614 TGAAGGACTGGGAAAATGACGACGTCCCATGGGAGCAACACGCCCGTTGGTTTGACCGAT 1155555 Query 105201 GTTCGTTCGTAAAACTGGTCAAAGGACACGACTACGTGCAG 105241 | | | ||| | | || ||||| | ||||||||| ||| Sbjct 1155554 GCGCTTACGTCCAGTTAGTGAAAGGTCGCGACTACGTACAG 1155514 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 104762 GACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAAATAATGCGCTGGTTGGAGGGCGACGAC 104821 ||||||||||| ||||| ||||| || |||||||||||| | ||| | ||||| || ||| Sbjct 1155987 GACGAAGTGCGTTGCGCCTTCTGTAAGGTGGAAATAATGAGATGGGTCGAGGGAGATGAC 1155928 Query 104822 CCGGCCGTAGATCATAAACGATGGGCGCCACAGTGCCCGTTTTTG 104866 || || ||||||| || |||||||| ||||| || ||| || Sbjct 1155927 CCAGCTCAGGATCATAGTCGCTGGGCGCCGCAGTGTCCCTTTCTG 1155883 >seq53 Length=2198565 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||| ||||| |||| || |||||||| || |||| ||||| Sbjct 1830985 AATGCAAATTTTTGTTAAAACACTGACAGGAAAAACCATCACATTGGAGGTTGAACCTTC 1831044 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || | ||| | || ||| ||||| ||||| ||||| |||| || || Sbjct 1831045 AGACACCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCA 1831104 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | ||||| | || || || |||||||||||| ||| || | || || || Sbjct 1831105 GCAACGTCTTATCTTCGCTGGAAAGCAATTGGAAGATGGCCGAACGCTGTCAGACTACAA 1831164 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAAT 111330 || ||||| ||||| || | ||| | || | |||||| | ||||||||| Sbjct 1831165 CATTCAAAAGGAATCAACCTTGCATCTTGTACTCCGTCTGAGAGGTGGCAAT 1831216 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||||||||| || ||||| | || ||||||||||| ||| | ||| |||| || Sbjct 1830757 AATGCAAATTTTCGTTAAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTC 1830816 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || | ||| | || ||| |||||| ||||| ||||| |||| || || Sbjct 1830817 TGACACCATTGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCA 1830876 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | || || | ||| || || || ||||||||| || | | || || || Sbjct 1830877 GCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAA 1830936 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCT 111317 || ||||| ||||| ||||| ||| | ||||| ||||| Sbjct 1830937 CATTCAAAAGGAATCAACACTTCATCTTGTGTTACGTCT 1830975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421773425225248