Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq183 120 3e-22 >seq183 Length=738700 Score = 120 bits (132), Expect = 3e-22 Identities = 142/191 (74%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 || ||||||||||| |||| ||||||||| ||||| | |||||| || ||||||||| Sbjct 171073 ATGTATGTATCAATGAGTAGGGAATACATTTCTGAATGTACATTTTCCATTGCAATCTGA 171014 Query 23839 AACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAA 23898 || ||||| |||||||| ||||| | | ||| || || | | || |||| | | | | Sbjct 171013 AAGCCATAGAAACATCTGGCTTCTGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGA 170954 Query 23899 TTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGT 23958 ||||| || || || ||||| |||||||||||||| | |||| || || || || Sbjct 170953 TTTTCATTGACTATGCCATCTGATGCAGCAAAGAAAGCCAATACATGCTTAATGAAGTGC 170894 Query 23959 CTTTCATCAGT 23969 || ||| |||| Sbjct 170893 CTCTCA-CAGT 170884 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 |||||||| ||||| |||||| || |||| || ||||||| ||||| ||||| Sbjct 171509 TCATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTCCTCTCTTTTTC 171450 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||||||||||| |||||| ||| || |||||||| ||||||||||| ||||| || Sbjct 171449 AGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAGCGGCAAATGCT 171390 Query 23653 ACAAGACGTGTACCAAATGTTGCA 23676 |||| | | ||||||||| ||| Sbjct 171389 ACAATTCTTTCACCAAATGTAGCA 171366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521440101327200