Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq53 190 5e-43 seq578 98.7 2e-15 >seq53 Length=2198565 Score = 190 bits (210), Expect = 5e-43 Identities = 173/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| |||||||| ||||| |||||||| || |||||| ||| ||| Sbjct 1830761 CAAATTTTCGTTAAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTCTGAC 1830820 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| || ||||| ||||| ||||| || || || ||||||||| Sbjct 1830821 ACCATTGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAGCAA 1830880 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| ||| | |||||||| | || ||| | || || ||| | Sbjct 1830881 CGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAACATT 1830940 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||| ||||||||||| |||||||| || | ||||| Sbjct 1830941 CAAAAGGAATCAACACTTCATCTTGTGTTACGTCTCAG 1830978 Score = 165 bits (182), Expect = 2e-35 Identities = 175/230 (76%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972 ||||||||| | || ||||| |||||||| || |||||||| ||||| | || || | Sbjct 1830525 TTAAAATGC---AGATCTTCGTAAAAACTCTTACGGGAAAAACCATCACATTAGAAGTTG 1830581 Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||||||||||| || || || ||| || || |||||||| ||||| || || | Sbjct 1830582 AACCTTCAGACACCATTGAAAATGTTAAAGCTAAAATCCAGGACAAGGAAGGTATTCCAC 1830641 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | ||||||||||| || ||||| || ||||| ||| | |||||||| | || ||| | | Sbjct 1830642 CAGACCAGCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAG 1830701 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | || ||| | ||||| || |||||||| |||||||| || | |||||| Sbjct 1830702 ACTACAACATTCAAAAGGAGTCAACACTTCATCTTGTGTTACGTCTCAGA 1830751 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || ||||||||||| ||||| | ||||| ||| |||||| Sbjct 1830989 CAAATTTTTGTTAAAACACTGACAGGAAAAACCATCACATTGGAGGTTGAACCTTCAGAC 1831048 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || || || ||||| ||||| || || || ||||||||| Sbjct 1831049 ACCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCAGCAA 1831108 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| ||||| || | |||||||| | || || | || || ||| | Sbjct 1831109 CGTCTTATCTTCGCTGGAAAGCAATTGGAAGATGGCCGAACGCTGTCAGACTACAACATT 1831168 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| |||||||| |||||||||| Sbjct 1831169 CAAAAGGAATCAACCTTGCATCTTGT 1831194 >seq578 Length=1472074 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||||||||| || || || || || || ||||| ||| ||| || Sbjct 656044 CAGATCTTCGTAAAAACTCTCACGGGGAAGACCATTACTCTTGAGGTTGAACCCTCGGAT 656103 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||||| || || ||| || ||||| |||||||||||||||||||| || || || Sbjct 656104 ACCATCGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAACA 656162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203617873221512