Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq429 113 4e-20 seq53 111 1e-19 >seq429 Length=186180 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| || || || |||||||| |||||||||||||| ||||| ||| | || Sbjct 15697 AACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGACAGGGTACGCCCATCT 15638 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || || || || || ||||| |||| ||||||||||| | || | | |||||| ||| Sbjct 15637 TCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGGATTCCCTCCTTATCC 15578 Query 41771 ATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| || ||||| | ||||||| | ||||||||| | || || || Sbjct 15577 TGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACCTCTAGGGTGATGGTC 15518 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| || || || || || ||||||||||| Sbjct 15517 TTACCCGTGAGGGTTTTCACAAAGATCTGCATGTT 15483 >seq53 Length=2198565 Score = 111 bits (122), Expect = 1e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||||||||| ||||| || || |||||| |||||||| ||||| || |||||||| Sbjct 1830747 AGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGG 1830688 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || | |||||| || || || || || || || ||||| | |||| | ||| Sbjct 1830687 CCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCC 1830628 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || |||| |||| ||| | | ||||| | || || || | || Sbjct 1830627 TTGTCC-TGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGT 1830569 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTA 41866 || ||||| ||||| || || |||||||| |||||||| ||| Sbjct 1830568 GATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCATTTTA 1830526 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||||||||| ||||| || || ||||| |||||||| ||||| || |||||||| Sbjct 1830975 AGACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGG 1830916 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || | |||||| || || || || || || || ||||| | |||| | ||| Sbjct 1830915 CCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCC 1830856 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | ||| |||| |||| || | | ||||| | ||||| || | || Sbjct 1830855 TTGT-CTTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGT 1830797 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || || || || || |||||||| ||||| Sbjct 1830796 GATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462261537377600