Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq93292 154 2e-32 seq64116 120 3e-22 >seq93292 Length=5156 Score = 154 bits (170), Expect = 2e-32 Identities = 200/271 (74%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTG-TCGTGGAGCCC 119841 |||||| | ||||| ||||| || || | | || ||||| | ||| ||||| | || Sbjct 1412 TTCATAAAACGTATTTTTCCAAAGACAGGCCTCTCTTTCCATCC-CTGATCGTGAACACC 1354 Query 119842 CGCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTT 119901 || | ||| | || || ||||||||||| ||||| ||||||| || |||||||| Sbjct 1353 ACATATAGACCACATACAACCGACGTATCCGTTCGGATCTCTTCCATCCAATTCGTATTT 1294 Query 119902 ATCGTTTAAGTAGATA-CAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTA 119960 ||| ||||| || ||| || | || ||||| ||| || | ||| |||| ||||||| Sbjct 1293 ATCATTTAAATAAATAGCAAATTCT-AACGCTTGTTCGGGTGATTCGGTCCACTCCAGTA 1235 Query 119961 tttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAA 120020 |||| || ||||| |||||||| | ||||||||||||| || || | ||||||||| | Sbjct 1234 TTTTCTTTGCCCAATACATACGGAGAAATCCATGCATTTTTCCGTCTCTAACCATTTGTA 1175 Query 120021 GTTGTGCGGCGTTCCATAAGGGATCGTGTGT 120051 || || || ||||||||| |||||| || Sbjct 1174 TCTGCGCCGCATTCCATAAGTCATCGTGAGT 1144 >seq64116 Length=3934 Score = 120 bits (132), Expect = 3e-22 Identities = 225/329 (68%), Gaps = 4/329 (1%) Strand=Plus/Minus Query 16795 TCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACG 16854 |||||| || || |||| || ||| ||| | ||||| ||||| || || ||| Sbjct 3263 TCTATCGGCCACGTATTCGATGTATGTCTTCATGAGATCGCAATTCATGCCAATCAGATT 3204 Query 16855 TACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACT 16914 || || | |||||||| | ||| || || |||||||||||||| || | || | Sbjct 3203 CACAGGCAATGCTTCCGTTAGAAACTCCTGTTCAATAACAACCGCTTCTTTCACTAT--T 3146 Query 16915 AGCAACTCGTTC--CTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAA 16972 |||| | ||| ||| | ||| | | | || ||| | || | ||||| |||||| Sbjct 3145 TGCAAAACTTTCTCCTCATATGGTTTGTTCTCAATGTGTCTGAATAGAAGACACGCGAAA 3086 Query 16973 TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032 |||||||| | ||| || || | |||||||| ||| || ||||| || ||||| Sbjct 3085 TCGCAATGAAGTCCTTCATCGCGAGAAATAAGTTCATTACTGAACGTCAATCCAGGCATA 3026 Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092 ||| || || || | ||| ||||| | ||||| || ||| |||||| || || ||| Sbjct 3025 AGTCCGCGCTTTTTAAGCCAGAATATGGAAGCGAAGGAACCACTAAAGAAAATTCCTTCG 2966 Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGC 17121 || || || || |||| || |||||||| Sbjct 2965 ACTGACGCGAAAGCGACCAAACGTTCGGC 2937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516861980486280