Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq93292 127 2e-24 seq64116 98.7 1e-15 >seq93292 Length=5156 Score = 127 bits (140), Expect = 2e-24 Identities = 194/271 (72%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTG-TCGTGGAGTCC 118994 ||||| | ||||| |||||||| || | | ||| |||||| | ||| ||||| | || Sbjct 1412 TTCATAAAACGTATTTTTCCAAAGACAGGCCTCTCTTTCCATCC-CTGATCGTGAACACC 1354 Query 118995 TGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTT 119054 || | ||| | ||| || ||||||||||| |||||| |||| || || ||||| || Sbjct 1353 ACATATAGACCACATACAACCGACGTATCCGTTCGGATCTCTTCCATCCAATTCGTATTT 1294 Query 119055 ATCGTTTAAGTAGATA-CAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTA 119113 ||| ||||| || ||| || | | |||||| ||| || | | |||| ||||||| Sbjct 1293 ATCATTTAAATAAATAGCAAATTC-TAACGCTTGTTCGGGTGATTCGGTCCACTCCAGTA 1235 Query 119114 tttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAA 119173 |||| || ||||| |||||||| | | | || |||||||| || || ||| ||| || | Sbjct 1234 TTTTCTTTGCCCAATACATACGGAGAAATCCATGCATTTTTCCGTCTCTAACCATTTGTA 1175 Query 119174 GTTGTGCGGTGTTCCATAGAGGATCGTGTGT 119204 || || | ||||||| |||||| || Sbjct 1174 TCTGCGCCGCATTCCATAAGTCATCGTGAGT 1144 >seq64116 Length=3934 Score = 98.7 bits (108), Expect = 1e-15 Identities = 218/327 (67%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 16033 TCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCG 16092 |||||| || || |||| || ||| ||| | |||||||| || || || || Sbjct 3263 TCTATCGGCCACGTATTCGATGTATGTCTTCATGAGATCGCAATTCATGCCAATCAGATT 3204 Query 16093 TACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATC 16152 || || | |||| |||| ||| | ||||| || |||||||||||||| | || | Sbjct 3203 CACAGGCAATGCTTCCGTTAGAAACTCCTGTTCAATAACAACCGCTTCTTTCACTATTTG 3144 Query 16153 GGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTC 16212 || ||| | ||| | | | | |||| | || | ||||||||||| || Sbjct 3143 CAAAACTTTCTCCTCATATGGTTTGTTCTCAATGTGTCTGAATAGAAGACACGCGAAATC 3084 Query 16213 GCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTT 16272 |||||| |||||||| || | |||||||| || || || || || ||||| Sbjct 3083 GCAATGAAGTCCTTCATCGCGAGAAATAAGTTCATTACTGAACGTCAATCCAGGCATAAG 3024 Query 16273 TCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAAC 16332 ||| || || || | ||||||||| | ||| || || || |||||| || || || || Sbjct 3023 TCCGCGCTTTTTAAGCCAGAATATGGAAGCGAAGGAACCACTAAAGAAAATTCCTTCGAC 2964 Query 16333 AGATGCAAAAGCGATTAATCGTTCCGC 16359 || || ||||||| || ||||| || Sbjct 2963 TGACGCGAAAGCGACCAAACGTTCGGC 2937 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 16587 CCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGA 16646 |||| || || || || || || || || || ||||| || ||||| | ||| || | Sbjct 2566 CCAGATTTTCGTTAACAATCCCATCGCTGGCGGCAAAGAATGCCAACACGTGTGATATAA 2507 Query 16647 AATATTTTTCGT-CAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACT 16705 ||| ||||| | | || |||| ||| |||||| |||| ||| | | ||| ||| Sbjct 2506 AATGCTTTTCATTCTTAT-TAAGTTTATTCCAATCGCTTAAGTCTCTCCCGAGATCTACT 2448 Query 16706 TCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTAT 16765 |||||| ||||| ||| ||| | || || |||||||| | |||||| || | ||| Sbjct 2447 TCTTCTACTGTCCAGAAGGAGGCCTCAGCTTTCTTATACATCTGCCAAATGTCCGTATAT 2388 Query 16766 TGTATGGGAAATACGACG 16783 | || |||||||||||| Sbjct 2387 TCGATCGGAAATACGACG 2370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510738879111720