Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq64116 127 2e-24 >seq64116 Length=3934 Score = 127 bits (140), Expect = 2e-24 Identities = 228/333 (68%), Gaps = 0/333 (0%) Strand=Plus/Minus Query 23945 AAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTC 24004 || |||||| || | || |||||| || || | || || ||||| ||||| | || Sbjct 3284 AACTCCCAACTCTTGGAGCAGTCTATCGGCCACGTATTCGATGTATGTCTTCATGAGATC 3225 Query 24005 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 24064 |||||||| || || || || || || | || | || ||||| || ||||||||| Sbjct 3224 GCAATTCATGCCAATCAGATTCACAGGCAATGCTTCCGTTAGAAACTCCTGTTCAATAAC 3165 Query 24065 GACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTT 24124 ||||| ||| | | || ||| | || ||| ||| | | | ||| | Sbjct 3164 AACCGCTTCTTTCACTATTTGCAAAACTTTCTCCTCATATGGTTTGTTCTCAATGTGTCT 3105 Query 24125 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 24184 || | | ||| ||||||||||| || || || || || | | ||| | ||| || Sbjct 3104 GAATAGAAGACACGCGAAATCGCAATGAAGTCCTTCATCGCGAGAAATAAGTTCATTACT 3045 Query 24185 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 24244 ||||| | ||| ||||| || || |||||||||||||| |||||||| || || || || Sbjct 3044 GAACGTCAATCCAGGCATAAGTCCGCGCTTTTTAAGCCAGAATATGGAAGCGAAGGAACC 2985 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 | ||||||||||||||| |||| ||| || || Sbjct 2984 ACTAAAGAAAATTCCTTCGACTGACGCGAAAGC 2952 Score = 113 bits (124), Expect = 5e-20 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 24521 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 24580 |||||| || || || || || ||||| ||||| || ||||| || ||| |||||||| Sbjct 2562 ATTTTCGTTAACAATCCCATCGCTGGCGGCAAAGAATGCCAACACGTGTGATATAAAATG 2503 Query 24581 TTTTTCGTCTGGTGTTA-GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTT 24639 ||||| | | | ||| ||||||||||||| | | ||| | | ||| ||||||| Sbjct 2502 CTTTTCAT-TCTTATTAAGTTTATTCCAATCGCTTAAGTCTCTCCCGAGATCTACTTCTT 2444 Query 24640 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAA 24699 | |||||||| || || ||||| || || |||||||| | ||| ||||| ||||| | Sbjct 2443 CTACTGTCCAGAAGGAGGCCTCAGCTTTCTTATACATCTGCCAAATGTCCGTATATTCGA 2384 Query 24700 TTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTC 24745 | ||||| | || || | ||||||| | ||| | |||||| Sbjct 2383 TCGGAAATACGACGAAACGCCTTGGATTCTCACGAAGAAGTGGTTC 2338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592937360560080