Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq97621 96.9 3e-15 seq71986 87.8 2e-12 >seq97621 Length=3513 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | || ||||| || || || || ||||| || || || | || Sbjct 3290 AGGACCAGATGGAGGGTTGACTCTTTCTGGATATTGTAGTCGCTGAGTGTGCGGCCATCT 3349 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || || | |||||||||||||| ||| || | |||||| ||||| Sbjct 3350 TCGAGCTGTTTTCCAGCGAAGATAAGTCTCTGCTGATCCGGAGGAATGCCTTCTTTGTCC 3409 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| ||| |||||| | | | ||||| ||||| || | ||||||||| Sbjct 3410 TGGATTTTTGCTTTCACATTCTCAATGGTATCGGACGGCTCAACCTCTAAAGTAATGGTC 3469 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || ||||| || || || |||||||| |||||| Sbjct 3470 TTTCCGGTCAATGTCTTCACAAATATCTGCATT 3502 >seq71986 Length=2235 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||||| || |||| ||| | ||| || || ||||||||||| || || Sbjct 487 CCTCCTCTCAGCCGAAGAACCAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCACTG 546 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| || || ||||| ||||| | |||||||||||||| || || Sbjct 547 AGAGTACGGCCGTCTTCGAGTTGTTTACCCGCGAATATAAGTCTCTGCTGATCGGGAGGT 606 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| |||||| || || | | | ||||||| | || | Sbjct 607 ATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCTATGGTATCACTCGCTTCAACT 666 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || ||||| || || || || || || || ||||| ||||||||| Sbjct 667 TCAAGAGTGATGGTTTTACCCGTCAATGTCTTCACGAATATCTGCATTTTG 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421715387023436