Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq93292 289 4e-73 seq71986 131 3e-25 >seq93292 Length=5156 Score = 289 bits (320), Expect = 4e-73 Identities = 860/1307 (66%), Gaps = 53/1307 (4%) Strand=Plus/Minus Query 202760 ACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGT 202819 ||||| ||||||||| ||||||| | ||| ||||| | | ||||| ||||| | || Sbjct 1442 ACATCGAATTTACGTTTACATCCATTATAGTTCATAAAACGTATTTTTCCAAAGACAGGC 1383 Query 202820 CTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCA 202879 || ||||||||| | ||| |||| |||||| || ||||||||||| || || ||||| Sbjct 1382 CTCTCTTTCCATCCCTGATCGTGAACACCACATATAGACCACATACAACCGACGTATCCG 1323 Query 202880 TTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCT 202939 || ||||| | |||||| | |||||||||||||||| || ||| Sbjct 1322 TTCGGATCTCTTCCATCCAATTCGTATTTATCATTTAAATAAATAGCAAATTCTAACGCT 1263 Query 202940 TCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCA 202999 | ||| ||||||| ||||| || | |||||| || ||||||||||| | | | ||||| Sbjct 1262 TGTTCGGGTGATTCGGTCCACTCCAGTATTTTCTTTGCCCAATACATACGGAGAAATCCA 1203 Query 203000 TGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGTT 203059 |||||||| || | ||| ||||||| | || | ||||||||||| | || ||||| Sbjct 1202 TGCATTTTTCCGTCTCTAACCATTTGTATCTGCGCCGCATTCCATAAGTCATCGTGAGTC 1143 Query 203060 AATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCATTTTTATGTTCA 203119 | | ||||||| | | |||||||| | || | ||| | || ||||| || ||| Sbjct 1142 AGACCTTTTTCAAACTCTTCCAAACTATACAAATACTCTCTTTTGTCTTTTTTGTGATCA 1083 Query 203120 TTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTTCATTATAA 203179 |||| ||||||| |||||| | || | || | | ||||| ||||||||||||||| Sbjct 1082 TTTAATGTTTTTCGTGCCCATTCATAACTGCCCTCCAATTTATCATAATTTTCATTATAA 1023 Query 203180 TAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAAAAAACTTCTACC 203239 |||||||||||||| || |||| | |||| || ||||| ||| ||| | || || Sbjct 1022 TAACAAAAATTATCGGCTAATTCTCTGCGAACAACCGCTTCCTCAACAAATGCCTCAACA 963 Query 203240 GAT--TTAGGATATAATTTTTTATATTTGTTAATTTCTAATATTATTCTTTGAGTTGAAA 203297 ||| | | || || |||| | | || | | | ||| | |||| ||| | Sbjct 962 GATGCCTTGTATTTA--GATTTAAACTGATTGACAACAAGTATCGCGCGTTGAACTGACA 905 Query 203298 TTTGACCAAAATGTATCCATGGTGATAAATT--ACTTATTGCATTAGCATTTGGATCATT 203355 || || ||||| | | || || | ||| || ||| | | ||||||| ||| Sbjct 904 ACTGTCCGAAATGGAAATAAGGCGAAAGATTAGACAAATT--TTGATTGTTTGGATTATT 847 Query 203356 TCtttttttagcataatcttttaatctattttgtataaatatatctaatattttaaatgc 203415 ||||| | ||| | |||| ||| || | ||| | || || | | ||| || Sbjct 846 TCTTTCGGTCGCAAATCCTTTCAATTTAGTGGAACAAAACTTGTCCAACAAATCAAAGGC 787 Query 203416 atattttGTACCAGATTTTGCCCAAGAAACAGGTTTAACATTTCTATCAA---------T 203466 | ||| || || || |||| ||| ||| ||||| | |||| | Sbjct 786 AGCTTTAGTTCCGCTTTGAATCCAATCAACTTCTTTGACATTCGTGTCAACTTCTAAACT 727 Query 203467 ATTT---AATGATT---GTTCTGCttttttccaattattatttattttaatatatgtatt 203520 |||| | ||| | || |||| || | || ||| | || | | | | Sbjct 726 ATTTTTAATTGAATTCCAGTCAACTTTATTTCCATCATTGAGTTGTTGATCAGTTACAGA 667 Query 203521 ataagtatgtttaataataggtataaattCAGTTAAATATTCTGATAATTTATAATTTAT 203580 ||| | ||||||||||| ||| ||| | ||| | | || || ||| | | || || Sbjct 666 ATATGGGTGTTTAATAATTGGTGGAAAATTAGTAAGAAATAGTGGTAAGTGTTGATGAAT 607 Query 203581 TTTATTTCTAATGGTTTTTGCAGAATATTCTAATTTATTACTAGCAATCCAACATGGTAC 203640 |||||| || |||||| |||| ||||| | |||||| | | |||| || || Sbjct 606 TTTATTCCTTATGGTTCTTGCGCTGTATTCACACTTATTAGATGTGACCCAAACGGGAAC 547 Query 203641 AATATTATGTGAATCAACTTGATAAACATCAATA-TTTATTTTACTAA-TAAGTTGA--- 203695 |||||||| ||||| | |||| ||| | ||| || | || ||| | | |||| Sbjct 546 GATATTATGAGAATCTATTTGACAAATAGGTATAGATTGTGGTAATAACTTATTTGATAG 487 Query 203696 ----TTTACCCAATTATTAAATATTTTAATAGGATAAAAATCA---ACAATCAATACACC 203748 | | ||| | || | ||| || ||| || ||| |||||| |||| Sbjct 486 CATTTGTGTCCATTGTTTTGAGATTCGAAGTGGACCGAAGTCAGTCACAATC---GCACC 430 Query 203749 AATATTATAtttttttATAAATTTTGGTAATACATCTACTGATATTCCTATCAATAGATG 203808 || | || |||| |||| ||| || || || || | | ||||| | || || Sbjct 429 GATTCTGTACTTTTCAGCGAATTGTGGCAACACTTCCACCGCTTCTCCTAATAGTAAGTG 370 Query 203809 AAAATGTATAT-TTAAAT-TTTTACATTCTTCTTCCATTTGTTTAACACCATTCAACATA 203866 ||||| |||| |||| | |||| ||||| | ||| | || || | ||| || |||||| Sbjct 369 -AAATG-ATATGTTAAGTGTTTTGCATTCATTTTCAACTTCTTGTAAACCCTTTAACATA 312 Query 203867 AAATCAAATTGTCTAATTGTAGCATT-AAGAAATTCTGGTACTAAACATATACACATATG 203925 || | | || | || || || || ||||| ||| || |||||||| | ||||| | Sbjct 311 AACATATAGTGACGTATCGTTGCGTTCAAGAACTTC-GGGACTAAACAAAAACACACA-- 255 Query 203926 TAATGACGA-TTTTGATTTTAA-TGCTAATTCTTGTGCATAAATTAAACCCCAATTATCT 203983 ||| || || ||||| |||| | | | ||| |||||||||||| |||||| ||| Sbjct 254 TAAAGAGGACATTTGAACTTAAGAGACAGTCTTTGCGCATAAATTAAAGACCAATTGTCT 195 Query 203984 TGAATTCTTTGATCTC-TAACACACCAAT--ATAATA-CATTATTAT 204026 | ||||| |||||||| | ||| ||||| |||||| ||||| ||| Sbjct 194 TCAATTCGTTGATCTCTTGACA-TCCAATACATAATACCATTACTAT 149 >seq71986 Length=2235 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| ||||| | |||||| | || || ||||| || ||| | || ||||||| | Sbjct 714 AATGCAGATATTCGTGAAGACATTGACGGGTAAAACCATCACTCTTGAAGTTGAAGCGAG 655 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || ||| |||| || ||||| || ||||| |||||||| || ||||| Sbjct 654 TGATACCATAGAGAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATACCTCCCGATCA 595 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || ||||| || || || |||||| | || || | || || | ||||| || Sbjct 594 GCAGAGACTTATATTCGCGGGTAAACAACTCGAAGACGGCCGTACTCTCAGTGATTACAA 535 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 |||||||||||||||||| | ||||||||| | || | |||| || |||||| Sbjct 534 CATTCAAAAAGAATCAACTCTTCATTTGGTTCTTCGGCTGAGAGGAGGCGCTAAAAA 478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754458127612800