Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq97621 131 1e-25 seq71986 105 6e-18 seq95232 84.2 2e-11 >seq97621 Length=3513 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || |||||||| | | |||| |||| || |||||||| || || ||||| ||||| Sbjct 3275 CCACCGCGTAAACGAAGGACCAGATGGAGGGTTGACTCTTTCTGGATATTGTAGTCGCTG 3334 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||| |||||||||||||||||| |||| || | ||||||||| ||||| Sbjct 3335 AGTGTGCGGCCATCTTCGAGCTGTTTTCCAGCGAAGATAAGTCTCTGCTGATCCGGAGGA 3394 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| || ||||| |||||| ||| || | || | ||| || | ||| ||| Sbjct 3395 ATGCCTTCTTTGTCCTGGATTTTTGCTTTCACATTCTCAATGGTATCGGACGGCTCAACC 3454 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || ||||||| || || ||||| |||||||| Sbjct 3455 TCTAAAGTAATGGTCTTTCCGGTCAATGTCTTCACAAATATCTGCAT 3501 >seq71986 Length=2235 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || |||||||||||||||||||| || | ||| || || ||| Sbjct 505 ACCAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCACTGAGAGTACGGCCGTCTTCG 564 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| || ||| | || || | |||||||||||||||||| ||||| ||||| | Sbjct 565 AGTTGTTTACCCGCGAATATAAGTCTCTGCTGATCGGGAGGTATACCCTCTTTGTCCTGA 624 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | || | ||| || | ||| || || || | || | ||||| Sbjct 625 ATCTTTGCCTTTACATTCTCTATGGTATCACTCGCT-TCAACTTCAAGAGTGATGGTTTT 683 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || || |||||||| Sbjct 684 ACCCGTCAATGTCTTCACGAATATCTGCAT 713 >seq95232 Length=1676 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 ||||||||||||| |||||||| | ||| | ||| ||||| |||||||| || | | Sbjct 194 CTTTTTGAATGTTATAATCGCTTAAAGTTCTTCCATCTTCGAGTTGTTTTCCGGCAAATA 253 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | | |||||||| ||||| || ||||| ||| ||| || || | | Sbjct 254 TCAATCTTTGCTGATCCGGAGGAATNNNNNNNTTGTCCTGAATCTTTGCCTTCACATTCT 313 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 ||| ||| |||| ||||||||| | || | || || || |||| || || |||| Sbjct 314 CGATGGTATCCGAAGGCTCGACCTCTAGAGTGATGGTCTTTCCTGTCAATGTCTTCACAA 373 Query 118729 AAATCTGCAT 118738 | |||||||| Sbjct 374 AGATCTGCAT 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433271684876332