Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq64116 105 1e-17 seq38739 93.3 8e-14 >seq64116 Length=3934 Score = 105 bits (116), Expect = 1e-17 Identities = 219/321 (68%), Gaps = 5/321 (2%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || || || || |||| |||||||| |||||||||||| | ||||| ||||| |||||| Sbjct 2949 GTCGCTTTCGCGTCAGTCGAAGGAATTTTCTTTAGTGGTTCCTTCGCTTCCATATTCTGG 3008 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || | || || ||||||| | || | | ||||| | |||||| | || Sbjct 3009 CTTAAAAAGCGCGGACTTATGCCTGGATTGACGTTCAGTAATGAACTTATTTCTCGCGAT 3068 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 ||||| |||||| |||| || || || | || || | | | || | | ||| | Sbjct 3069 GAAGGACTTCATTGCGATTTCGCGTGTCTTCTATTCAGACA-CATTGAGAACAAACCATA 3127 Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157 | | ||||||| || | |||| || | ||||| || |||||||| || ||||| Sbjct 3128 TGAGGAGAAAG--TTTTGCAAATAGTGAAAGAAGCGGTTGTTATTGAACAGGAGTTTCTA 3185 Query 102158 ACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATG-AGCCAGTACAT 102216 || | | ||||||| || | | || ||||| ||| | | ||| || || ||||| Sbjct 3186 ACGGAAGCATTGCCTGTGAATCTGATTGGCATGAATTGCGATCTCATGAAGACA-TACAT 3244 Query 102217 TGAATTTGTGGCAGATAAACT 102237 |||| ||||| |||| ||| Sbjct 3245 CGAATACGTGGCCGATAGACT 3265 >seq38739 Length=464 Score = 93.3 bits (102), Expect = 8e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 35245 AATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGC 35304 ||| || |||||||||||| | |||||||| ||||| ||| | || | || || | Sbjct 65 AATCTTTTGGAGAGGAGTTCTCGAAGAACTTCTTTGGTTTATCCGCGGAAGCACTGATTC 124 Query 35305 CAAAGAATTGGCC-AAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTT 35363 ||| ||||| || || | || | | |||||| ||| || ||||| || ||| Sbjct 125 CAATGAATTATCCAAACTTGGAG-TGAAAATCTGGTCCGCAAACGGGTCCCGATCTTTTC 183 Query 35364 TGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCC 35423 | |||||| ||||| ||| || ||| |||||||| ||||| || || || || | Sbjct 184 TCGACAGTCTTGGGTTCACTGATCGACAAGAAGGAGATTTAGGACCTGTTTATGGGTTTC 243 Query 35424 AATGGCGTCATTTTGGTGCTGAATATGATA 35453 | ||| | |||||||| ||| ||||||||| Sbjct 244 AGTGGAGACATTTTGGCGCTAAATATGATA 273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988244192635805