Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq64116 132 6e-26 >seq64116 Length=3934 Score = 132 bits (146), Expect = 6e-26 Identities = 228/327 (70%), Gaps = 8/327 (2%) Strand=Plus/Minus Query 33392 AAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTC 33451 || |||||| || | || |||||| || ||| |||| || ||||| ||||| | || Sbjct 3284 AACTCCCAACTCTTGGAGCAGTCTATCGGCCACGTATTCGATGTATGTCTTCATGAGATC 3225 Query 33452 ACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGA 33511 |||||||| || || || || || || | || | || ||||| || |||||||| Sbjct 3224 GCAATTCATGCCAATCAGATTCACAGGCAATGCTTCCGTTAGAAACTCCTGTTCAATAAC 3165 Query 33512 TACCGCATTTGTTATAATAAATCTAACGGTTTCT--TCACTCGGTGGATGTAATAAATGT 33569 ||||| || || | || | || ||||| ||| ||| ||| | ||||| Sbjct 3164 AACCGC--TTCTTTCACTATTTGCAAAACTTTCTCCTCATATGGTT--TGTTCTCAATGT 3109 Query 33570 TTA--AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGT 33627 | || | | ||| ||||||||||| || || || || || | | ||| | ||| | Sbjct 3108 GTCTGAATAGAAGACACGCGAAATCGCAATGAAGTCCTTCATCGCGAGAAATAAGTTCAT 3049 Query 33628 TAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATG 33687 || ||||| | ||| ||||| || || |||||||||||||| |||||||||||||| | Sbjct 3048 TACTGAACGTCAATCCAGGCATAAGTCCGCGCTTTTTAAGCCAGAATATGGAAGCGAAGG 2989 Query 33688 ATCCGGAAAAGAAGATTCCTTCTACTG 33714 | || |||||| |||||||| |||| Sbjct 2988 AACCACTAAAGAAAATTCCTTCGACTG 2962 Score = 116 bits (128), Expect = 5e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 33968 ATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 |||||| || || || ||||| ||||| ||||| || ||||| || ||| |||||||| Sbjct 2562 ATTTTCGTTAACAATCCCATCGCTGGCGGCAAAGAATGCCAACACGTGTGATATAAAATG 2503 Query 34028 TTTTTCGTCTGGTGTTA-GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTT 34086 ||||| | | | ||| ||||||||||||| | | ||| | | ||| ||||||| Sbjct 2502 CTTTTCAT-TCTTATTAAGTTTATTCCAATCGCTTAAGTCTCTCCCGAGATCTACTTCTT 2444 Query 34087 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGA 34146 | |||||||| || || ||||| || || |||||||| | ||| ||||| ||||| || Sbjct 2443 CTACTGTCCAGAAGGAGGCCTCAGCTTTCTTATACATCTGCCAAATGTCCGTATATTCGA 2384 Query 34147 TTGGGAAAATAACAAATCTATTTGGATT 34174 | || || | || || | ||||||| Sbjct 2383 TCGGAAATACGACGAAACGCCTTGGATT 2356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628985681804880