Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq97621 132 5e-26 seq71986 104 2e-17 seq95232 82.4 8e-11 >seq97621 Length=3513 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||||||| | || | || | || |||||||| || || || || ||||| Sbjct 3274 GCCACCGCGTAAACGAAGGACCAGATGGAGGGTTGACTCTTTCTGGATATTGTAGTCGCT 3333 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| |||||||||||||| ||||| |||| || | |||||||| ||||| Sbjct 3334 GAGTGTGCGGCCATCTTCGAGCTGTTTTCCAGCGAAGATAAGTCTCTGCTGATCCGGAGG 3393 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||||||| ||| | | || | || |||| ||||| || Sbjct 3394 AATGCCTTCTTTGTCCTGGATTTTTGCTTTCACATTCTCAATGGTATCGGACGGCTCAAC 3453 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| |||||||| || || || ||||| ||||| Sbjct 3454 CTCTAAAGTAATGGTCTTTCCGGTCAATGTCTTCACAAATATCTGCAT 3501 >seq71986 Length=2235 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | || | ||| || |||| || || |||||||||||||| ||||| || Sbjct 486 GCCTCCTCTCAGCCGAAGAACCAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCACT 545 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||||||||| |||||||| || | || || | |||||||||||||| Sbjct 546 GAGAGTACGGCCGTCTTCGAGTTGTTTACCCGCGAATATAAGTCTCTGCTGATCGGGAGG 605 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||| || |||||||| ||| | |||| |||| | || | || || | | || | Sbjct 606 TATACCCTCTTTGTC-CTGAATCTTTGCCTTTACATTCTCTATGGTATCACTCGCTTCAA 664 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||| || | || || || ||||| || || |||||||| ||||| Sbjct 665 CTTCAAGAGTGATGGTTTTACCCGTCAATGTCTTCACGAATATCTGCAT 713 >seq95232 Length=1676 Score = 82.4 bits (90), Expect = 8e-11 Identities = 133/191 (70%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 139575 CTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGA 139634 |||||||||||||||||||||| | || || |||||||| ||||| || ||| | | Sbjct 194 CTTTTTGAATGTTATAATCGCTTAAAGTTCTTCCATCTTCGAGTTGTTTTCCGGCAAATA 253 Query 139635 TCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGT 139693 ||| | ||||||||| ||||| || ||||| ||| | |||| || | | Sbjct 254 TCAATCTTTGCTGATCCGGAGGAATNNNNNNNTTGTC-CTGAATCTTTGCCTTCACATTC 312 Query 139694 TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 || | || || | ||||| ||||| | || | ||||| || ||||| || || || Sbjct 313 TCGATGGTATCCGAAGGCTCGACCTCTAGAGTGATGGTCTTTCCTGTCAATGTCTTCACA 372 Query 139754 AATATTTGCAT 139764 || || ||||| Sbjct 373 AAGATCTGCAT 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495408755263200