Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq64116 123 4e-23 >seq64116 Length=3934 Score = 123 bits (136), Expect = 4e-23 Identities = 229/336 (68%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 49770 AAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTC 49829 || |||||| || | || |||||| || || |||| || ||||| ||||| | || Sbjct 3284 AACTCCCAACTCTTGGAGCAGTCTATCGGCCACGTATTCGATGTATGTCTTCATGAGATC 3225 Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889 |||||||| || || || || || || | || | || ||||| || |||||||| Sbjct 3224 GCAATTCATGCCAATCAGATTCACAGGCAATGCTTCCGTTAGAAACTCCTGTTCAATAAC 3165 Query 49890 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTT 49949 ||||| ||| | | || ||| | || ||| ||| | | | ||| | Sbjct 3164 AACCGCTTCTTTCACTATTTGCAAAACTTTCTCCTCATATGGTTTGTTCTCAATGTGTCT 3105 Query 49950 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 50009 || | | ||| ||||||||||| || || || || || | | ||| ||||| || Sbjct 3104 GAATAGAAGACACGCGAAATCGCAATGAAGTCCTTCATCGCGAGAAATAAGTTCATTACT 3045 Query 50010 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCC 50069 ||||| | ||| ||||| || || |||||||||||||| |||||||| || || || || Sbjct 3044 GAACGTCAATCCAGGCATAAGTCCGCGCTTTTTAAGCCAGAATATGGAAGCGAAGGAACC 2985 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAAC 50105 | |||||| |||||||| |||| || || || || Sbjct 2984 ACTAAAGAAAATTCCTTCGACTGACGCGAAAGCGAC 2949 Score = 122 bits (134), Expect = 1e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 50346 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 |||||| || || || || || ||||| ||||| || ||||| || ||| ||||||||| Sbjct 2562 ATTTTCGTTAACAATCCCATCGCTGGCGGCAAAGAATGCCAACACGTGTGATATAAAATG 2503 Query 50406 TTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 50465 ||||| || | |||||||||||||| | | ||| | | |||||||||||| Sbjct 2502 CTTTTCATTCTTATTAAGTTTATTCCAATCGCTTAAGTCTCTCCCGAGATCTACTTCTTC 2443 Query 50466 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGAT 50525 |||||||| || || ||||| || || |||||||| | ||| ||||| ||||| ||| Sbjct 2442 TACTGTCCAGAAGGAGGCCTCAGCTTTCTTATACATCTGCCAAATGTCCGTATATTCGAT 2383 Query 50526 TGGGAAAATAACAAATCTATTTGGATT 50552 || || | || || | ||||||| Sbjct 2382 CGGAAATACGACGAAACGCCTTGGATT 2356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717320047720440