Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq64116 127 3e-24 >seq64116 Length=3934 Score = 127 bits (140), Expect = 3e-24 Identities = 228/333 (68%), Gaps = 0/333 (0%) Strand=Plus/Minus Query 41875 AAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTC 41934 || |||||| || | || |||||| || | | |||| || ||||| ||||| | || Sbjct 3284 AACTCCCAACTCTTGGAGCAGTCTATCGGCCACGTATTCGATGTATGTCTTCATGAGATC 3225 Query 41935 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 41994 |||||||| || || || || || || | || | || ||||| || ||||||||| Sbjct 3224 GCAATTCATGCCAATCAGATTCACAGGCAATGCTTCCGTTAGAAACTCCTGTTCAATAAC 3165 Query 41995 GACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTT 42054 ||||| ||| | | || ||| | || ||| ||| | | | ||| | Sbjct 3164 AACCGCTTCTTTCACTATTTGCAAAACTTTCTCCTCATATGGTTTGTTCTCAATGTGTCT 3105 Query 42055 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGA 42114 || | | ||| ||||||||||| || || || ||||| | | ||| | ||| || Sbjct 3104 GAATAGAAGACACGCGAAATCGCAATGAAGTCCTTCATCGCGAGAAATAAGTTCATTACT 3045 Query 42115 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCC 42174 ||||| | ||| ||||| || || |||||||||||||| ||||| || || || || || Sbjct 3044 GAACGTCAATCCAGGCATAAGTCCGCGCTTTTTAAGCCAGAATATGGAAGCGAAGGAACC 2985 Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 | |||||| |||||||| |||| ||| || || Sbjct 2984 ACTAAAGAAAATTCCTTCGACTGACGCGAAAGC 2952 Score = 107 bits (118), Expect = 3e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 42451 ATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 42510 ||||||||| || || || || ||||| ||||| || ||||| || ||| |||||||| Sbjct 2562 ATTTTCGTTAACAATCCCATCGCTGGCGGCAAAGAATGCCAACACGTGTGATATAAAATG 2503 Query 42511 TTTTTCGTCCGGTGTTAA-TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTT 42569 ||||| | | | |||| |||||||||||| | | ||| | | ||||||||||| Sbjct 2502 CTTTTCATTCT-TATTAAGTTTATTCCAATCGCTTAAGTCTCTCCCGAGATCTACTTCTT 2444 Query 42570 CTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAA 42629 |||| ||||| || || || || || || |||||||| | ||| || || ||||| | Sbjct 2443 CTACTGTCCAGAAGGAGGCCTCAGCTTTCTTATACATCTGCCAAATGTCCGTATATTCGA 2384 Query 42630 TTGGGAAAATAACAAATCTATTTGGATT 42657 | || || | || || | ||||||| Sbjct 2383 TCGGAAATACGACGAAACGCCTTGGATT 2356 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 |||||| || | || || || || || || || || || ||||| || ||||||||||| Sbjct 3451 CATAACACCACTCTTCTGATACTCTCCGACCCGCTTCTCAAAAAAGTTTGTCTTTCCTTC 3392 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAA 41866 | |||||| | |||||||||||| |||||||| || ||||||| Sbjct 3391 AAGTGATATTTGTTCCATGAAATCGAACGGATTATTAGAATTATAA 3346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670252700619960