Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq97621 98.7 7e-16 seq95232 84.2 2e-11 >seq97621 Length=3513 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || || |||||| || ||||| || ||| | | | || |||| || Sbjct 3293 ACCAGATGGAGGGTTGACTCTTTCTGGATATTGTAGTCGCTGAGTGTGCGGCCATCTTCG 3352 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | |||||||| || || || | | ||||| ||| |||| | |||||||| || Sbjct 3353 AGCTGTTTTCCAGCGAAGATAAGTCTCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGG 3412 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 |||||| ||| || | ||| ||||| | |||||| || || | ||||| || || Sbjct 3413 ATTTTTGCTTTCACATTCTCAATGGTATCGGACGGCTCAACCTCTAAAGTAATGGTCTTT 3472 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || |||||||||||||| ||||| Sbjct 3473 CCGGTCAATGTCTTCACAAATATCTGCAT 3501 >seq95232 Length=1676 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 |||||||||| ||||||||| |||| | |||| || | ||||||||| ||||||| Sbjct 194 CTTTTTGAATGTTATAATCGCTTAAAGTTCTTCCATCTTCGAGTTGTTTTCCGGCAAATA 253 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 |||| | |||||| ||| |||| | || || ||| ||| || || | Sbjct 254 TCAATCTTTGCTGATCCGGAGGAATNNNNNNNTTGTCCTGAATCTTTGCCTTCACATTCT 313 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 | | ||||| | ||||| || || | || || || || || || || |||||||||| Sbjct 314 CGATGGTATCCGAAGGCTCGACCTCTAGAGTGATGGTCTTTCCTGTCAATGTCTTCACAA 373 Query 44112 ATATTTGCAT 44121 | || ||||| Sbjct 374 AGATCTGCAT 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354320694235308