Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq93292 246 7e-60 seq71986 187 6e-42 seq97621 165 2e-35 seq95232 143 6e-29 seq43048 93.3 1e-13 seq95747 84.2 5e-11 >seq93292 Length=5156 Score = 246 bits (272), Expect = 7e-60 Identities = 335/465 (72%), Gaps = 2/465 (0%) Strand=Plus/Plus Query 238434 GAACTAGCTGATAATTTTTGCTATTATAATAAAAGATATGATTCTATAGAATCCACACAT 238493 ||| |||| ||||||||||| ||||||||| ||| |||||| | || || || Sbjct 1000 GAATTAGCCGATAATTTTTGTTATTATAATGAAAATTATGATAAATTGGAGGGCAGTTAT 1059 Query 238494 TCATGGGCACGAGAAACATTAGAAGCACACGTAAATGATAGAAGAAAATATATTTACTCT 238553 |||||||||| |||||||| | | ||| ||| || | |||| | ||| | || | Sbjct 1060 GAATGGGCACGAAAAACATTAAATGATCACAAAAAAGACAAAAGAGAGTATTTGTATAGT 1119 Query 238554 TTAAAACAGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAA 238613 || || || | || | || ||||||||| | |||||||| | || ||||||||| Sbjct 1120 TTGGAAGAGTTTGAAAAAGGTCTGACTCACGATGACTTATGGAATGCGGCGCAGATACAA 1179 Query 238614 ATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTT 238673 ||||| ||| || ||||||||| | || | || ||||||||||| || || ||||| Sbjct 1180 ATGGTTAGAGACGGAAAAATGCATGGATTTCTCCGTATGTATTGGGCAAAGAAAATACTG 1239 Query 238674 GAATGGACTAGATCTCCAAAGGAAGCTCTTAG-ATATAGTATTTATCTGAACGATAAATA 238732 || ||||| ||| || | |||| |||| || | ||||||| | || |||||||| Sbjct 1240 GAGTGGACCGAATCACCCGAACAAGC-GTTAGAATTTGCTATTTATTTAAATGATAAATA 1298 Query 238733 CGAACTCGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATT 238792 |||| | || || | ||||| ||||||||||| |||||||||||||| |||||||| | Sbjct 1299 CGAATTGGATGGAAGAGATCCGAACGGATACGTCGGTTGTATGTGGTCTATATGTGGTGT 1358 Query 238793 ACACGATAGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGA 238852 |||||| || |||| ||||| ||| | ||||||||| | | | ||||| ||| | Sbjct 1359 TCACGATCAGGGATGGAAAGAGAGGCCTGTCTTTGGAAAAATACGTTTTATGAACTATAA 1418 Query 238853 AGGAACTAAGAAAAAATTTGATGTAAATGCTTTTATCAGTAAATA 238897 ||| ||| ||||| ||||| || ||||| | | |||||| Sbjct 1419 TGGATGTAAACGTAAATTCGATGTCAACGCTTTCGTTAATAAATA 1463 >seq71986 Length=2235 Score = 187 bits (206), Expect = 6e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| |||| ||| || | ||| | || |||||||| ||||| || || ||| Sbjct 487 CCTCCTCTCAGCCGAAGAACCAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCACTG 546 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| | |||||||| |||||||| || || || || || ||||| ||||| |||||| Sbjct 547 AGAGTACGGCCGTCTTCGAGTTGTTTACCCGCGAATATAAGTCTCTGCTGATCGGGAGGT 606 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || ||||| |||||||||||||| |||||||| |||| |||||| || | ||| || Sbjct 607 ATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCTATGGTATCACTCGCTTCAACT 666 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || ||||| || | ||| || || ||||||||||||||| Sbjct 667 TCAAGAGTGATGGTTTTACCCGTCAATGTCTTCACGAATATCTGCATTTTG 717 >seq97621 Length=3513 Score = 165 bits (182), Expect = 2e-35 Identities = 165/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || |||||||| ||||| ||||| || || | || || Sbjct 3289 AAGGACCAGATGGAGGGTTGACTCTTTCTGGATATTGTAGTCGCTGAGTGTGCGGCCATC 3348 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || ||||||||||| || || || ||||| ||||| ||||| || |||||||| || Sbjct 3349 TTCGAGCTGTTTTCCAGCGAAGATAAGTCTCTGCTGATCCGGAGGAATGCCTTCTTTGTC 3408 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| || |||||||| ||||| || | ||||||| || || ||||||| ||||| || Sbjct 3409 CTGGATTTTTGCTTTCACATTCTCAATGGTATCGGACGGCTCAACCTCTAAAGTAATGGT 3468 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| || || | ||| || ||||||||||||||| Sbjct 3469 CTTTCCGGTCAATGTCTTCACAAATATCTGCATT 3502 >seq95232 Length=1676 Score = 143 bits (158), Expect = 6e-29 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| ||||| ||||| || || |||||| || ||||| ||||||||||| ||||| | Sbjct 194 CTTTTTGAATGTTATAATCGCTTAAAGTTCTTCCATCTTCGAGTTGTTTTCCGGCAAATA 253 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | | || || ||||| ||||| || || |||||||||||||| || ||||| | Sbjct 254 TCAATCTTTGCTGATCCGGAGGAATNNNNNNNTTGTCCTGAATCTTTGCCTTCACATTCT 313 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | |||||| ||| || |||||||| || || ||||| || || | ||| || |||| Sbjct 314 CGATGGTATCCGAAGGCTCGACCTCTAGAGTGATGGTCTTTCCTGTCAATGTCTTCACAA 373 Query 104550 ATATCTGCATTTT 104562 | ||||||||||| Sbjct 374 AGATCTGCATTTT 386 >seq43048 Length=5060 Score = 93.3 bits (102), Expect = 1e-13 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 || ||||| || |||||||| || || ||||| || || || || || | |||||| | Sbjct 1 TCCGGAGGAATACCTTCTTTGTCTTGTATCTTAGCCTTAACGTTCTCAATGGTATCTGAA 60 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || ||||||| || || ||||| ||||| | ||| || ||||| |||||||||||| Sbjct 61 GGCTCCACCTCTAAAGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATCTGCATTTTG 120 Query 104564 T 104564 | Sbjct 121 T 121 >seq95747 Length=1806 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 |||| |||||| | || | | ||||| | |||| ||| |||||||| ||||| Sbjct 660 TCTTCCTGAATGCTGTAACGACAGAGAGTCCAGCCGTATTCCAGTTGTTTATTCGCAAAG 601 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || |||||||| | |||||||||||||| | || | ||||||||| |||||||| Sbjct 600 ATGAGTGTCTGTTGAGCGGGAGGTATTCCTTCCGTGTCATTAATCTTTGCCTTTACATTC 541 Query 104489 TCTACGGTATC 104499 || || |||| Sbjct 540 TCCACATTATC 530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149839510552068