Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq38739 98.7 1e-15 seq91742 93.3 5e-14 >seq38739 Length=464 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 7061 ATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTT- 7119 |||||||||| | | ||| | || || | |||||||||||| |||||||| | || Sbjct 384 ATGGATTCCACGAACACATAATCATTCGGCGATCATTTGGATTA-TTTTTAATAGTATTG 326 Query 7120 ATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTAT-ATA 7178 |||| | | ||||| | ||| ||| ||||| | || || ||||| ||| Sbjct 325 ATAACATCCTTCAGCTGATCCACACCACAACCCCTATAATCACAATC-CATTTTATCATA 267 Query 7179 ATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACG 7238 ||||| |||||||||||||| ||||||||||||| ||| |||||||| ||||||| || Sbjct 266 TTTAGCGCCAAAATGTCTCCACTGAAACCCATAAACAGGTCCTAAATCTCCTTCTTGTCG 207 Query 7239 AT 7240 || Sbjct 206 AT 205 >seq91742 Length=2991 Score = 93.3 bits (102), Expect = 5e-14 Identities = 246/373 (66%), Gaps = 2/373 (1%) Strand=Plus/Plus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 || ||| |||| ||| |||||| | || ||||| ||| |||||| ||| || Sbjct 1001 AACTGGGATTTCGAAAGTATGGGAATCGGAGGACTCGATAAAGAATTCAACGCTATATTT 1060 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 | ||||| |||||||| | | |||| |||||| ||| || || | || || Sbjct 1061 CGTCGAGCGTTTGCTTCACGTGTATTTCCGCCCGAAATTATAGAACAACTCGGACTAAAG 1120 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 || | || ||| ||||| |||| || || || || || || | ||||| ||| Sbjct 1121 CACGTTCGCGGTATTCTATTATATGGCCCGCCCGGCACTGGAAAGACTCTTATGGCCCGA 1180 Query 164572 TGCATTGCTCAAGCTTTTAAATCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTG 164631 || | |||| |||| || || |||||| || || || || || | | Sbjct 1181 CAAATCGGTCAAATGCTTAATGCGAGAGAACCTAAAATAGTAAACGGACCACAAATTCTA 1240 Query 164632 AACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAA 164691 | |||||||| ||||| |||||||||||| || | ||||| || ||| || |||||| Sbjct 1241 GATAAATATGTCGGTGAATCAGAAGCTAATATTCGTAAGTTATTCGCGGACGCGGAAGAA 1300 Query 164692 GAACA-AAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGA 164750 ||| | ||| || | || |||| ||||| | ||| |||||||||| || || Sbjct 1301 GAAGAGAAACGAATGGGCAATA-ATAGTGGTCTACATATCATTATTTTTGATGAAATCGA 1359 Query 164751 TGCTCTTTGCAAA 164763 ||| |||||||| Sbjct 1360 TGCCATTTGCAAA 1372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595084920123600