Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq64116 136 5e-27 >seq64116 Length=3934 Score = 136 bits (150), Expect = 5e-27 Identities = 224/323 (69%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 33114 AAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTC 33173 || |||||| || | || |||||| || ||| |||| || ||||| ||||| | || Sbjct 3284 AACTCCCAACTCTTGGAGCAGTCTATCGGCCACGTATTCGATGTATGTCTTCATGAGATC 3225 Query 33174 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 33233 |||||||| || || || || || || | || | || ||||| || |||||||| Sbjct 3224 GCAATTCATGCCAATCAGATTCACAGGCAATGCTTCCGTTAGAAACTCCTGTTCAATAAC 3165 Query 33234 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTT 33293 ||||| ||| | | || ||| | || ||| ||| | | | ||| | Sbjct 3164 AACCGCTTCTTTCACTATTTGCAAAACTTTCTCCTCATATGGTTTGTTCTCAATGTGTCT 3105 Query 33294 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 33353 || | | ||| ||||||||||| || || || || || | | ||| ||||| || Sbjct 3104 GAATAGAAGACACGCGAAATCGCAATGAAGTCCTTCATCGCGAGAAATAAGTTCATTACT 3045 Query 33354 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33413 ||||| | ||| ||||| || || |||||||||||||| |||||||||||||| || || Sbjct 3044 GAACGTCAATCCAGGCATAAGTCCGCGCTTTTTAAGCCAGAATATGGAAGCGAAGGAACC 2985 Query 33414 AGAAAAGAAGATTCCTTCTACTG 33436 | |||||| |||||||| |||| Sbjct 2984 ACTAAAGAAAATTCCTTCGACTG 2962 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||| |||||| || || || || || ||||| ||||| || ||||| || ||| ||||| Sbjct 2566 CCAGATTTTCGTTAACAATCCCATCGCTGGCGGCAAAGAATGCCAACACGTGTGATATAA 2507 Query 33746 AATATTTTTCGTCTGGTGTTA-GTTTATTCCAATCATTGATATCTTTAGATATATCTACT 33804 ||| ||||| | | | ||| ||||||||||||| | | ||| | | ||||||| Sbjct 2506 AATGCTTTTCAT-TCTTATTAAGTTTATTCCAATCGCTTAAGTCTCTCCCGAGATCTACT 2448 Query 33805 TCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATAT 33864 ||||| |||||||| || || ||||| || || |||||||| | ||| ||||| |||| Sbjct 2447 TCTTCTACTGTCCAGAAGGAGGCCTCAGCTTTCTTATACATCTGCCAAATGTCCGTATAT 2388 Query 33865 TGGATTGGGAAAATAACAAATCTATTTGGATT 33896 | ||| || || | || || | ||||||| Sbjct 2387 TCGATCGGAAATACGACGAAACGCCTTGGATT 2356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622124356830360