Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq71986 145 5e-30 seq105658 98.7 7e-16 seq8318 93.3 3e-14 seq97621 89.7 3e-13 >seq71986 Length=2235 Score = 145 bits (160), Expect = 5e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||| || | |||||||||||||| || |||||||| ||||||||| Sbjct 487 CCTCCTCTCAGCCGAAGAACCAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCACTG 546 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| |||| || | |||||| || || ||||| || | || ||||||| || Sbjct 547 AGAGTACGGCCGTCTTCGAGTTGTTTACCCGCGAATATAAGTCTCTGCTGATCGGGAGGT 606 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||||||| ||| ||| ||| ||||||| | ||||| | ||||||| Sbjct 607 ATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCTATGGTATCACTCGCTTCAACT 666 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || |||||||||||||| || ||||||||||||||||| || Sbjct 667 TCAAGAGTGATGGTTTTACCCGTCAATGTCTTCACGAATATCTGCATTTT 716 >seq105658 Length=5670 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 4807 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 4748 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 4747 GGTTATATTTAG 4736 >seq8318 Length=395 Score = 93.3 bits (102), Expect = 3e-14 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 19968 CAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGCCTTA 20023 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 3 CAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGCTGTAATATTTAGCCTTA 58 >seq97621 Length=3513 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||||| | |||| ||| || || ||| || || |||||||| || Sbjct 3275 CCACCGCGTAAACGAAGGACCAGATGGAGGGTTGACTCTTTCTGGATATTGTAGTCGCTG 3334 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | |||||||| || || || || | || ||||| | || Sbjct 3335 AGTGTGCGGCCATCTTCGAGCTGTTTTCCAGCGAAGATAAGTCTCTGCTGATCCGGAGGA 3394 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| |||||| |||||||||| | ||||| ||||| Sbjct 3395 ATGCCTTCTTTGTCCTGGATTTTTGCTTTCACATTCTCAATGGTATCGGACGGCTCAACC 3454 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| ||||| || || || ||||| || ||||| ||||||||||| Sbjct 3455 TCTAAAGTAATGGTCTTTCCGGTCAATGTCTTCACAAATATCTGCAT 3501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334515833119601