Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq105197 104 3e-17 seq64116 102 9e-17 seq69059 100 3e-16 >seq105197 Length=5513 Score = 104 bits (114), Expect = 3e-17 Identities = 79/92 (86%), Gaps = 6/92 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| ||||| |||||| |||| | | Sbjct 213 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGT--CCTCAAATGAGG 270 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTA 126352 ||||||||||||||||||| ||||||||| || Sbjct 271 GCGTGGGTTCGAACCCCACTCCTGACAAAATA 302 >seq64116 Length=3934 Score = 102 bits (112), Expect = 9e-17 Identities = 279/423 (66%), Gaps = 6/423 (1%) Strand=Plus/Minus Query 92923 TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACG 92982 |||||| || || |||| ||||| ||| | ||| |||||||| || | ||| Sbjct 3263 TCTATCGGCCACGTATTCGATGTATGTCTTCATGAGATCGCAATTCATGCCAATCAGATT 3204 Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 ||||| | || || || | || || | || || ||||| |||||||||| |||| Sbjct 3203 CACAGGCAATGCTTCCGTTAGAAACTCCTGTTCAATAACAACCGCTTCTTTCACTATTTG 3144 Query 93043 TATTACT--CTACT-ATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAA 93099 | ||| || || || |||| || || | | | | || | | | ||||| || Sbjct 3143 CAAAACTTTCTCCTCATATGGT--TTGTTCT-CAATGTGTCTGAATAGAAGACACGCGAA 3087 Query 93100 GTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAA 93159 ||| ||| | ||||| || || || || | ||||| ||||| || || || || | Sbjct 3086 ATCGCAATGAAGTCCTTCATCGCGAGAAATAAGTTCATTACTGAACGTCAATCCAGGCAT 3027 Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219 ||||| || || || ||||| ||||| ||||| || |||| ||| || || ||||| Sbjct 3026 AAGTCCGCGCTTTTTAAGCCAGAATATGGAAGCGAAGGAACCACTAAAGAAAATTCCTTC 2967 Query 93220 CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTT 93279 || | || || || || | |||||||||||| | || || | || |||| Sbjct 2966 GACTGACGCGAAAGCGACCAAACGTTCGGCAAATGTGGCCGATTCGCTAGAAGTCCAGGC 2907 Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339 | ||||| | || || |||| || ||| || || |||| || |||||||| || | Sbjct 2906 CATCGCCCACTTAGCCTTCTTCTGAACACACGGAAGGTTTTCAATGGCGTTAAACAGAAA 2847 Query 93340 ATC 93342 ||| Sbjct 2846 ATC 2844 >seq69059 Length=1213 Score = 100 bits (110), Expect = 3e-16 Identities = 85/101 (84%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 126261 TTACA-GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGG 126319 ||||| |||||| ||||||||||||||||||||||||| ||||| |||||| | | | | Sbjct 80 TTACATGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTCCTCAAGTG 139 Query 126320 A--GCGTGGGTTCGAACCCCACACCTGACA-AATTATTATT 126357 | ||||||||||||||||||| | ||||| |||| || || Sbjct 140 AGGGCGTGGGTTCGAACCCCACTCTTGACACAATTCTTTTT 180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556125249530040