Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq71986 150 3e-31 seq97621 138 2e-27 seq95232 122 2e-22 seq102572 84.2 4e-11 >seq71986 Length=2235 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || || | ||||| || || || || |||||||| ||||| ||||| | Sbjct 487 CCTCCTCTCAGCCGAAGAACCAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCACTG 546 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | || || || |||||||| ||||| || || ||||| || Sbjct 547 AGAGTACGGCCGTCTTCGAGTTGTTTACCCGCGAATATAAGTCTCTGCTGATCGGGAGGT 606 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| |||||||||||||| || ||| ||||| || | ||| ||| Sbjct 607 ATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCTATGGTATCACTCGCTTCAACT 666 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||||| ||||| | ||||| ||||||||||||||| || Sbjct 667 TCAAGAGTGATGGTTTTACCCGTCAATGTCTTCACGAATATCTGCATTTTG 717 >seq97621 Length=3513 Score = 138 bits (152), Expect = 2e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 ||||| || ||||| | || | |||| || || || |||||||| ||||| || | Sbjct 3267 TTTAAGCGCCACCGCGTAAACGAAGGACCAGATGGAGGGTTGACTCTTTCTGGATATTGT 3326 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | ||| |||||| | |||||||| | ||| || || ||||| || ||||| || || | Sbjct 3327 AGTCGCTGAGTGTGCGGCCATCTTCGAGCTGTTTTCCAGCGAAGATAAGTCTCTGCTGAT 3386 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || ||||||||||| ||||| || || ||||| || || ||| ||||| || | | Sbjct 3387 CCGGAGGAATGCCTTCTTTGTCCTGGATTTTTGCTTTCACATTCTCAATGGTATCGGACG 3446 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || || || ||||| ||||| || | ||||| || |||||||||||| Sbjct 3447 GCTCAACCTCTAAAGTAATGGTCTTTCCGGTCAATGTCTTCACAAATATCTGCATT 3502 >seq95232 Length=1676 Score = 122 bits (134), Expect = 2e-22 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 ||||||| |||||||||||| | || || |||||||| | || || ||||| |||| Sbjct 194 CTTTTTGAATGTTATAATCGCTTAAAGTTCTTCCATCTTCGAGTTGTTTTCCGGCAAATA 253 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | | |||||| || || || ||||| ||||| |||||||||||||| || || Sbjct 254 TCAATCTTTGCTGATCCGGAGGAATNNNNNNNTTGTCCTGAATCTTTGCCTTCACATTCT 313 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 ||||||| || | | || || || | |||||||| ||||| || | ||||| || | Sbjct 314 CGATGGTATCCGAAGGCTCGACCTCTAGAGTGATGGTCTTTCCTGTCAATGTCTTCACAA 373 Query 68452 ATATCTGCATT 68462 | ||||||||| Sbjct 374 AGATCTGCATT 384 >seq102572 Length=1560 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/127 (73%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 68230 AATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAAT 68289 |||||||||||||||| || | ||||| || || || ||||||||||| || || |||| Sbjct 1434 AATTTCCTCCGCGAAGACGGAGAACCAAATGAAGWGTTGACTCTTTTTGWATRTTGTAAT 1493 Query 68290 CGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG 68349 | || || | || ||||| | || || || || || || | |||||| || || | Sbjct 1494 CRSWAAGAGTGCGGCCGTCTTCCAGTTGTTTGCCCGCAAAAATCAATCTTTGCTGATCCG 1553 Query 68350 GTGGAAT 68356 | ||||| Sbjct 1554 GAGGAAT 1560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920405040492120