Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq93292 107 2e-18 seq105658 104 2e-17 seq71986 84.2 2e-11 >seq93292 Length=5156 Score = 107 bits (118), Expect = 2e-18 Identities = 205/300 (68%), Gaps = 4/300 (1%) Strand=Plus/Plus Query 37811 GTTTGAAAACGCCGACACGCACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCG 37870 ||||||||| | || |||||| ||| ||||| ||||| || || || | || | Sbjct 1128 GTTTGAAAAAGGTCTGACTCACGATGACTTATGGAATGCGGCGCAGATACAAATGGTTAG 1187 Query 37871 CGAGGGTAAGATGCATCAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTC 37930 || || || |||||| | | | || ||||||||| |||||||| |||| ||| | Sbjct 1188 AGACGGAAAAATGCATGGATTTCTCCGTATGTATTGGGCAAAGAAAATACTGGAGTGGAC 1247 Query 37931 TGATGATGCTCAGACC--GCGCTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTG 37988 || || | || | ||| | | | || |||||| | |||||||| ||| ||| Sbjct 1248 CGA--ATCACCCGAACAAGCGTTAGAATTTGCTATTTATTTAAATGATAAATACGAATTG 1305 Query 37989 GACGGGCGTGATCCCAACGGTTACGTCGGCTGTTTGTGGTCTATATGCGGGCTACACGAT 38048 || || | ||||| ||||| |||||||| ||| ||||||||||||| || | |||||| Sbjct 1306 GATGGAAGAGATCCGAACGGATACGTCGGTTGTATGTGGTCTATATGTGGTGTTCACGAT 1365 Query 38049 AGAGCCTGGCGCGAGATTCCCATTTACGGCAAGATTCGGTACATGAACTACAACGGATGT 38108 | ||| |||| || | | || || || || | |||||||| || |||||| Sbjct 1366 CAGGGATGGAAAGAGAGGCCTGTCTTTGGAAAAATACGTTTTATGAACTATAATGGATGT 1425 >seq105658 Length=5670 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 1209 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 1150 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 1149 ATAACTGATATAATGAGCCTTTTGCGGTTTC 1119 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 1209 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 1150 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 1149 ATAACTGATATAATGAGCCTTTTGCGGTTTC 1119 >seq71986 Length=2235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||||||||| || |||| |||||| || || || |||||||||||||| | Sbjct 487 CCTCCTCTCAGCCGAAGAACCAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATC-ACT 545 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | ||| || || || ||||| || | ||||||||| || Sbjct 546 GAGAGTACGGCCGTCTTCGAGTTGTTTACCCGCGAATATAAGTCTCTGCTGATCGGGAGG 605 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | | |||||||||| ||| ||| ||| | ||| | ||||| | | ||| Sbjct 606 TATACCCTCTTTGTCCTGAATCTTTGCCTTTA-CATTCTCTATGGTATCACTCGCTTCAA 664 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 ||| | || || ||||| || || | ||| ||||| || || |||||||| Sbjct 665 CTTCAAGAGTGATGGTTTTACCCGTCAATGTCTTCACGAATATCTGCATTTT 716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396551037108142