Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq71986 118 1e-21 seq104118 86.0 7e-12 seq71442 84.2 2e-11 >seq71986 Length=2235 Score = 118 bits (130), Expect = 1e-21 Identities = 172/239 (72%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 41974 TTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 42033 |||| || |||||||| | || | |||||||| | || || |||||||| |||| Sbjct 480 TTTAGCG-CCTCCTCTCAGCCGAAGAACCAAATGAAGAGTTGATTCTTTTTGAATGTTGT 538 Query 42034 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 42093 ||||| ||||| || |||| || || || ||||| |||||||| |||| |||||| | Sbjct 539 AATCACTGAGAGTACGGCCGTCTTCGAGTTGTTTACCCGCGAATATAAGTCTCTGCTGAT 598 Query 42094 CGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTC 42152 ||| || | | ||| |||||| ||| | |||| || | || | | || || ||| Sbjct 599 CGGGAGGTATACCCTCTTTGTCC-TGAATCTTTGCCTTTACATTCTCTATGGTATCACTC 657 Query 42153 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | ||| || || | ||||||||||| ||||| | ||||| || || || |||||||| Sbjct 658 GCTTCAACTTCAAGAGTGATGGTTTTACCCGTCAATGTCTTCACGAATATCTGCATTTT 716 >seq104118 Length=623 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 56997 GAAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 ||||||||| |||| || | | ||| |||||| ||||||||||||||||||||| Sbjct 409 GAAAAATTTAATGCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGG 350 Query 57054 ATACTCACCACTATACTACCGAGGAT 57079 ||||| |||||||||||| ||||||| Sbjct 349 ATACTAACCACTATACTATCGAGGAT 324 >seq71442 Length=425 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 56998 AAAAATTTT-CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| | |||| || | | ||| |||||| ||||||||||||||||||||| ||| Sbjct 337 AAAAATAATGCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 396 Query 57057 CTCACCACTATACTACCGAGGAT 57079 || |||||||||||| ||||||| Sbjct 397 CTAACCACTATACTATCGAGGAT 419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542495277002640