Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq88396 174 6e-38 seq54261 114 5e-20 seq88999 107 8e-18 seq80910 104 9e-17 seq74238 104 9e-17 seq95232 91.5 6e-13 >seq88396 Length=2800 Score = 174 bits (192), Expect = 6e-38 Identities = 263/373 (71%), Gaps = 6/373 (2%) Strand=Plus/Minus Query 451224 GTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAG 451283 ||| || |||| || ||||| ||||| || | |||||| | | ||||||||||| Sbjct 2362 GTGGAAAGAAAATCTTCGCTCCAGAAGAGATCAGTGCAATGGTTTTGATTAAAATGAAAG 2303 Query 451284 AAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTT 451343 ||||||| ||| ||| | ||| || | | ||||| | || |||||||||| Sbjct 2302 AAACAGCTGAAGCCTATTTGGGTAAAAAGGTGTCGCACGCAGTTGTCACAGTTCCCGCTT 2243 Query 451344 ATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATG 451403 |||||||||| || ||||| || || |||||||| || || ||| ||||| | |||| Sbjct 2242 ATTTCAATGACGCTCAACGACAGGCCACTAAAGACGCCGGTGTTATCGCTGGACTCAATG 2183 Query 451404 TTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAA 451463 || | || |||||||| ||||| || || || || | || || || || | || || Sbjct 2182 TTATGCGTATTATTAACGAACCGACCGCTGCAGCCATTGCTTACGGTCTCGACAA---AA 2126 Query 451464 AAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTT 451523 | || || ||||||||||||||| ||||| ||||| || || ||||| ||| | Sbjct 2125 AGGA---AGGAGAAAAAAATATTTTGGTATTCGATTTGGGCGGCGGAACATTCGATGTCT 2069 Query 451524 CTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATC 451583 | | || | ||||| | || || |||||||| | || |||||||| |||||| Sbjct 2068 CCCTTCTCACTATTGATAACGGAGTGTTTGAAGTGGTTTCCACTAATGGTGACACTCATT 2009 Query 451584 TAGGAGGTGAAGA 451596 |||| |||||||| Sbjct 2008 TAGGTGGTGAAGA 1996 Score = 89.7 bits (98), Expect = 2e-12 Identities = 224/338 (66%), Gaps = 2/338 (1%) Strand=Plus/Minus Query 452184 TTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTG 452243 ||||||| ||| ||| || |||| ||| || |||||||| | ||||||||| || Sbjct 1324 TTAGTACTGCATCTGACAATCAACACACTGTCACAATTCAAGTCTATGAAGGAGAGCGAC 1265 Query 452244 CAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGC 452303 || | || ||||||| || | || ||||| || || |||||||| | Sbjct 1264 CACTAACTAAAGATAATCATCTTTTGGGTAAATTTGACCTGACAGGTATTCCTCCGGCAC 1205 Query 452304 CAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATG 452363 | | || |||||||||||| | || | ||| | |||| || ||||| || || | Sbjct 1204 CTCGAGGTGTGCCTCAAATTGAAGTGACTTTTGAAATCGATGTGAACGGTATACTGAAGG 1145 Query 452364 TGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAA 452423 | | || | || || | |||| || ||| || || ||||| ||||| ||| | | Sbjct 1144 TTACCGCTGAAGACAAGGGAACTGGTAATAAAGAGAAGATCACAATCACTAACGATCATA 1085 Query 452424 ACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATG 452483 |||| | || || ||||| |||| |||| | | || |||||||| ||| ||| | Sbjct 1084 ACCGACTGACTCCTGAGGATATCGAAAGAATGATTAAAGACGCAGAAAAGTTCGCGGACG 1025 Query 452484 ATGATGAACAAGTTAGA-AAACATGTTGAAGCTAAAAA 452520 | || || ||| || | || | ||||| || ||||| Sbjct 1024 ACGA-CAAAAAGATAAAGGAAAAGGTTGAGGCCAAAAA 988 >seq54261 Length=2469 Score = 114 bits (126), Expect = 5e-20 Identities = 232/343 (68%), Gaps = 10/343 (3%) Strand=Plus/Minus Query 451267 TCTT-ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 |||| |||||||||||||| || || || |||| | || || | | || | Sbjct 1662 TCTTGACTAAAATGAAAGAGACGGCTGAGGCATATCTAAACCAACCCGTGAAGAACGCGG 1603 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 | || || |||||||||||||||||||| | ||| | || || ||||||||||| || | Sbjct 1602 TCATAACAGTTCCCGCTTATTTCAATGACTCGCAAAGACAGGCCACTAAAGATGCTGGTC 1543 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 | || | || | || || | || | || |||||||| ||||| ||||| | || | Sbjct 1542 AGATATCAGGGCTTAACGTGTTGAGAGTGATCAATGAACCCACAGCTGCTGCCATTGCTT 1483 Query 451446 ATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTG 451505 |||| | ||| | | || ||||| | | |||| || | |||||| |||| Sbjct 1482 ATGGTAT-GGATA--------AGACTGAAGATAGAGTTATTGCTGTCTATGATTTAGGTG 1432 Query 451506 GAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAA 451565 | ||||| ||| |||| | ||| || || | || || |||||||| ||| ||| Sbjct 1431 GCGGAACATTTGACGTTTCTATCCTTGAGATACAAAAAGGAGTTTTTGAAGTCAAGTCAA 1372 Query 451566 CCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGC 451608 | ||||| || || ||||||| ||||| ||||||| || Sbjct 1371 CGAATGGGGACACGTTCTTAGGAGGGGAAGACTTTGATAACGC 1329 >seq88999 Length=1251 Score = 107 bits (118), Expect = 8e-18 Identities = 166/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 451200 CCTATATTCA-AGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCA 451258 |||| ||||| ||| || ||||||||| || || || ||| ||| |||||||| ||| Sbjct 1099 CCTAAATTCAGAGTCAAATATAAAGGTAAAGATATGACATTTTGTCCCGAAGAAATATCA 1040 Query 451259 TCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACT 451318 ||| |||| | ||||||||| ||| | | ||| | | | || | | ||| || Sbjct 1039 GCTAAAATTCTCAAGAAAATGAAACAAATATCGGAAAATCGTTTGGGATGTAAAGTAACA 980 Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 | || || || || ||||| || ||||| ||||| ||||| || || ||||||||| Sbjct 979 AAAGCGGTCATAACAGTTCCGGCATATTTTAATGACTCACAAAAACAGGCCACTAAAGAT 920 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGC 451434 || ||| | ||||| || | | ||||| | || || |||||||| || || || Sbjct 919 GCCGGAAAAATTGCAGGACTGGAAGTTCTGAGGATCATCAATGAACCAACTGCTGC 864 >seq80910 Length=732 Score = 104 bits (114), Expect = 9e-17 Identities = 189/271 (70%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 ||||||||| | ||| | |||||| | | |||||||| | || ||| |||| || Sbjct 284 CCTGAAGAACTCTCAGCCATGGTTTTGGACCATTTGAAAGAAGCGGCTGAAGCATATCTT 225 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || ||| | || || ||||| ||||| |||||||||||| || | ||| | Sbjct 224 GGAGAGAAAGTCAAAAGAGCGGTGATTACAGTTCCAGCTTATTTCAATAATTCTCAAAGA 165 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT-AATGA 451422 || || |||| |||||| ||| | ||||| ||| | | ||| || | ||||| || || Sbjct 164 CAGGCCACTAGAGATGCTGGAAAAATTGCCGGTCTTGAAGTTGTTAG-CTTATTGAACGA 106 Query 451423 ACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaa 451482 ||| || || ||||| | |||||||| | ||| |||| || | ||||| | || Sbjct 105 ACCAACTGCTGCTGCAATTGCATATGGTTT----CAAT-AAAACCAATA-AAGAAGAGAA 52 Query 451483 TATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | ||||| |||||||| |||||||| ||| Sbjct 51 AGTATTAGTCTTTGATTTAGGTGGAGGTACT 21 >seq74238 Length=2986 Score = 104 bits (114), Expect = 9e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 451889 AAAATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATG 451948 || ||||||||| || | || || ||||| || ||||||||||| ||||||||||| || Sbjct 421 AATATTGATGAAGTTATTCTGGTTGGAGGCTCAACACGAATTCCAAAAATTCAAGAACTG 362 Query 451949 TTGTCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTT 452008 || | |||||| |||||||| || ||| | ||||| |||||||||||| Sbjct 361 CTGAGTGAATATTTTAAAGGAAAACCTCTTAATAAATCTATTAATCCAGATGAAGCTGTT 302 Query 452009 GCATATGGTGCTGCAGTTCAAGCAGCTATTCT 452040 || |||||||| ||| | ||||| || || || Sbjct 301 GCTTATGGTGCAGCAATACAAGCTGCAATCCT 270 Score = 98.7 bits (108), Expect = 4e-15 Identities = 139/193 (72%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 ||||||| || || ||||| ||||||||||| ||||| || | |||||||| ||||||| Sbjct 969 ATGCAGTGATCACAGTTCCTGCTTATTTCAACGATGCCCAGAGACAAGCAACGAAAGATG 910 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || |||||| || || || || | |||| | ||||| || ||| |||| ||| Sbjct 909 CCGGTTGTATTGCAGGGTTGAAAGTATTGAAAATTCTGAATGAGCCCACATCAGCGGCTG 850 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499 |||| ||| | ||| ||| | ||||| || |||||||| || ||||||| Sbjct 849 TAGCGTATAG-CTATCAAA--CCAAAGATGATTCTCCGAAGAATATTTTTGTCTTTGATT 793 Query 451500 TTGGTGGAGGAAC 451512 | || || ||||| Sbjct 792 TAGGCGGTGGAAC 780 >seq95232 Length=1676 Score = 91.5 bits (100), Expect = 6e-13 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 391046 TATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATC 391105 || |||| | || || || || ||| |||| || || || || ||||| || || || | Sbjct 387 TAAAATGCAGATCTTTGTGAAGACATTGACAGGAAAGACCATCACTCTAGAGGTCGAGCC 328 Query 391106 ATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGA 391165 || |||| ||| || | | || ||| ||||| || || |||||||| || Sbjct 327 TTCGGATACCATCGAGAATGTGAAGGCAAAGATTCAGGACAANNNNNNNATTCCTCCGGA 268 Query 391166 TCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTA 391225 ||| ||| | || || || | || |||||||| ||||||||||||||||| ||||| Sbjct 267 TCAGCAAAGATTGATATTTGCCGGAAAACAACTCGAAGATGGAAGAACTTTAAGCGATTA 208 Query 391226 TAATATT 391232 ||| ||| Sbjct 207 TAACATT 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973043455718468