Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq88396 107 2e-18 seq85416 84.2 3e-11 >seq88396 Length=2800 Score = 107 bits (118), Expect = 2e-18 Identities = 255/383 (67%), Gaps = 3/383 (1%) Strand=Plus/Plus Query 7450 TCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAA 7509 |||| |||||| ||||||||||| || || || || || || | |||||||| Sbjct 1983 TCTCTGATCGAAGTCTTCACCACCTAAATGAGTGTCACCATTAGTGGAAACCACTTCAAA 2042 Query 7510 GATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAAT 7569 | || ||||| | | | || ||||| || || || || |||| || || | Sbjct 2043 CACTCCGTTATCAATAGTGAGAAGGGAGACATCGAATGTTCCGCCGCCCAAATCGAATAC 2102 Query 7570 GAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGT 7629 | | || | || || ||| || || ||||||||||| || || || || || || Sbjct 2103 CAAAATATTTTTTTC-TC--CTTCCTTTTTGTCGAGACCGTAAGCAATGGCTGCAGCGGT 2159 Query 7630 TGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 ||||| ||||||||||| | | || || ||||| ||| | || ||||| || || Sbjct 2160 CGGTTCGTTAATAATACGCATAACATTGAGTCCAGCGATAACACCGGCGTCTTTAGTGGC 2219 Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749 |||||||| | || || || || || || || || || || |||| || || || || Sbjct 2220 CTGTCGTTGAGCGTCATTGAAATAAGCGGGAACTGTGACAACTGCGTGCGACACCTTTTT 2279 Query 7750 ACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||| | ||| | ||| || | ||||||||||| | | |||||| | |||||||| Sbjct 2280 ACCCAAATAGGCTTCAGCTGTTTCTTTCATTTTAATCAAAACCATTGCACTGATCTCTTC 2339 Query 7810 AGCCGCAAACTGTTTCGTTTCAC 7832 | || || |||| || ||| Sbjct 2340 TGGAGCGAAGATTTTCTTTCCAC 2362 >seq85416 Length=4944 Score = 84.2 bits (92), Expect = 3e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 11458 GCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAATTCAAATATA 11517 ||||| |||||||| || || | |||||| ||| || | ||||||| | | || || Sbjct 4373 GCATCGATTTCATCAATGAATAGAATACAGGGTGCGTTCTTTCGTGCCATTGCGAACATG 4432 Query 11518 TCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATGACCCCGAACAC 11577 || | |||||| | ||| || || ||||||||||| | |||| || |||| | || Sbjct 4433 TCTCTAACTCTTGAAGGGCCGACACCGACAAACATTTCGAGGAACTCAGAACCCG-ATAC 4491 Query 11578 TG-AATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTGT 11636 || ||| || || ||| | ||||| || | || || | |||||||| || || Sbjct 4492 TGTAATGAAGGGTACGTTCGCCTCACCAGCGGTTGCCTTCGCGAGCAGTGTTTTGCCAGT 4551 Query 11637 ACCTGGTTTACCTGTTAATAATGCACCCCTTGGTATTTTAGCACC 11681 || || ||| || |||| || ||| |||||||||| || || Sbjct 4552 TCCGGGCGGACCAGTCAATAGCGCTCCCTTTGGTATTTTCGCGCC 4596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634293861023640